Alnus glutinosa (common alder): 133860351
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Entry
133860351 CDS
T10577
Name
(RefSeq) protein PAT1 homolog 2-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
aglu Alnus glutinosa (common alder)
Pathway
aglu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133860351
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aglu03019
]
133860351
Messenger RNA biogenesis [BR:
aglu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133860351
mRNA degradation factors
5'-3' decay
Decapping complex
133860351
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
133860351
NCBI-ProteinID:
XP_062151959
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Position
2:complement(20800812..20823406)
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AA seq
803 aa
AA seq
DB search
MLEISIRNLMVISEGNKIFDASQYEFFGQNVLEEVELGGLEEEGNGPAFGPADDEYHLFD
RDEGAGIGSLSEVDDLATTFAKLNRVVTGPRHPGVIGDRGSGSFSRESSSATEWAQEGDY
GNWLDQHIFDTESAQEEKRWSSQPQPSARHAEPNSLHRTSSYPEQQPVLHHYNSEPILVS
KSTFTSFPPPGSRTEQGSPHHLNISSLGGGPQMPFSAPNLSPLSNSNIHLAGLSHGLHYG
GNMRQFNTAGLSFNSRPQNHWVNHAGLLHGDHSSLLNNILQQQLPRQNGLLSPQIMPPQQ
QLQQQRLHHQVAPSLAHFAAMQSQLYAVHPSSSHKTMLGLADMRDQRPKSQKGKHSMRFS
HQGSDTGSQKSESGWVQIRSKYMTSEEIESILKMQLAATHSNDPYIDDYYHQASLAKKAA
GSRLKHPFCPSHLRELPSRGRNSTEQHPHLPIDALGRIPFSSIRRPRPLLEVDPPPSASG
DSSEQNVSEKPLEQEPMLAARITIEDGICLLLDIDDIDRLLQFSQPQDGGTQIRRRRQIL
LEGLAASLQLVDPLGKSSHTIGLTSKDDLVFLRLVSLPKGRKLLSRFLQLLFPGSELARI
VCMAIFRHLRFLFGGLPSDTGAAETTTNLARTVSSCVKGMDLRALSACLVAVVCSSEQPP
LRPVGSPAGDGASIILKSVLDRATELLTDPHGAGNCSTPNRALWQASFDEFFTLLTKYCL
SKYETIVQSICSQTQPNTEVIGSEAARAIGREMPVELLRASLPHTDEHQRKLLLDFGQRS
MPISGFSVRGGSSGQISSESVKG
NT seq
2412 nt
NT seq
+upstream
nt +downstream
nt
atgttagagattagtatccgaaacttgatggtaatttctgaaggtaataaaatcttcgat
gcatcacaatatgagtttttcggtcaaaatgttttggaagaagtggagttggggggttta
gaagaggaaggtaatggtcccgcatttggacctgctgatgatgagtaccatttgtttgac
agagacgagggtgcaggtatcggatctttgtctgaggtggatgatctggcaaccactttt
gcaaagttgaatagagttgtaacgggaccgagacacccgggagttattggtgatagagga
tctggatctttctcaagggaaagttcatctgctaccgagtgggcacaagaaggagattat
ggtaactggttagatcagcatatatttgacacagaaagtgctcaagaggagaaacggtgg
tcatcacagcctcagccttctgctcgtcatgcggaaccaaactctttgcacagaacatcc
tcataccccgagcagcaaccggtgctgcatcactacaacagtgaaccaattctagtatcc
aaatcaactttcacgtctttccctcctcctggaagcagaacagaacagggttcaccacac
cacctgaatatatcttctcttggtggtggtccccagatgcccttctctgcaccaaacctc
tctcctttatctaactctaatattcatttggctggtttatcacatgggttgcattacggt
gggaatatgcgtcagttcaacactgctggcctttcttttaatagcaggccgcagaatcac
tgggtcaaccatgctggtctactgcatggggatcactctagccttttaaataacattttg
caacaacagttacctcgacaaaatgggctcttgtccccccaaataatgccacctcagcag
cagctgcaacaacagagactgcaccatcaggttgcaccctctttggcccattttgcagca
atgcagtcccaactgtatgctgtccatccgtcatcctcacataagacaatgcttggattg
gctgatatgagagaccaaagacccaaatcacaaaagggcaaacatagtatgcgtttttct
catcaaggttctgatactggtagccagaaaagtgagagtgggtgggtccaaatcagatcc
aagtatatgacatctgaggaaatagagagtattcttaaaatgcaacttgctgctacacat
agcaatgatccatacatagatgactattatcaccaagcaagtcttgccaaaaaagctgct
gggtcaaggttgaaacaccctttctgcccatctcatctgagggagctcccttctcgaggc
cgtaatagtacggaacaacatcctcatctccctattgatgctcttggtaggattcctttc
tcttctatacgtaggcctcgacccctccttgaagttgatcctcctccctccgcatctggc
gatagctcagaacagaatgtctctgagaagcctctggaacaggaaccaatgcttgctgct
agaatcaccattgaggatggcatttgtcttcttcttgatattgatgatattgatcggctc
ttacaatttagtcagccccaggatggtgggactcagatcaggcgaaggcggcagatcctg
ctagaaggtctggcagcatcccttcagcttgtagacccgcttggaaaaagtagtcacact
attgggctgacttccaaggatgaccttgtgttcctacggttggtctctcttcccaagggt
cgaaaactcctttctaggttccttcagcttctcttccctggtagtgagcttgcccgtatt
gtttgtatggctattttccgtcatttaaggtttttgtttggtggccttccatctgataca
ggagcagcagagacaactactaatcttgcaaggacagtttcctcttgtgttaagggtatg
gatctgcgggcactgagtgcttgtcttgttgcggttgtttgttcctcagagcaaccacca
ctccgccctgttggaagtcctgctggagatggggcctccattattttgaaatctgtcctt
gatagggcgactgagctcttaactgatcctcatggtgctggcaactgtagcacacctaat
cgtgccctttggcaggcctcatttgatgaattctttactcttcttaccaagtattgcctg
agtaaatatgaaactatagtgcaatcgatatgttcacagacccagccaaacacagaagtc
atcggatcagaggcagccagagctatcggcagggaaatgcctgtggagcttctacgtgcc
agtcttcctcacactgatgagcaccaacggaaacttttattggattttggtcaacgatcc
atgcccatttctggtttcagtgtgcgtggtgggagcagtggccagataagctcagaatca
gttaagggttaa
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