Alnus glutinosa (common alder): 133861521
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Entry
133861521 CDS
T10577
Name
(RefSeq) 5'-3' exoribonuclease 4-like isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
aglu Alnus glutinosa (common alder)
Pathway
aglu03008
Ribosome biogenesis in eukaryotes
aglu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
133861521
09123 Folding, sorting and degradation
03018 RNA degradation
133861521
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aglu03021
]
133861521
03019 Messenger RNA biogenesis [BR:
aglu03019
]
133861521
03009 Ribosome biogenesis [BR:
aglu03009
]
133861521
03016 Transfer RNA biogenesis [BR:
aglu03016
]
133861521
Transcription machinery [BR:
aglu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
133861521
Messenger RNA biogenesis [BR:
aglu03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
133861521
Ribosome biogenesis [BR:
aglu03009
]
Eukaryotic type
Pre-60S particles
RNases
133861521
Transfer RNA biogenesis [BR:
aglu03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
133861521
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
133861521
NCBI-ProteinID:
XP_062153290
LinkDB
All DBs
Position
2:complement(19262659..19308067)
Genome browser
AA seq
1283 aa
AA seq
DB search
MGIPAFYRWLVERYPLAVATVIEDEPHLLDTTGPNPNGVEFDNLYLDMNGIVHPCFHPEG
LPPPKSYEDVFLAVFNYIDRIFSIVRPRKLLYLAIDGVAPRAKMNQQRSRRFRAAKDAAD
EVTCDHSQANGSECKLEAEEERSASLEQSKKLDSNVITPGTEFMVLLSMALRYYIHLRMN
RDAGWREIKVILSDANVPGEGEHKIMSYIRLQRNLPGYDPNTRHCLYGLDADLIMLALAT
HEIHCSVLREDVRGASPNDKTLKHAKDSLSINRQEERGNSKQMEVVGKNLEDYVSRQKFQ
FLNIWVLREYLAFDMRIQGLKSKADLERQIDDFVFMCLFVGNDFLPHIPSLEISEGAIDL
LMMVYKKEFVNMGGYLTNSFEVNLERVEKFVHAVGSHECAIFRRRSQVGKEREFRLRRFS
SNKHVRCSSNLMSQNPPDSSAVGVQTPSHCTSIGANAVEDKIKLGEMGWKERFYAEKFEA
ESEDDRKRIQRHAVFKYIEGICWVMRYYYEGVCSWQWFYPYHYAPFASDFHGIDQLKIEF
TLGEPFKPFDQLLSVLPAASAHALPLFYRKLMTDMSSPLLDFYPTDFELDMNGKRFSWQA
ICKLPFIDESRLLSEIANVEHTLTDEERCRNSFSLDVLYVHISHPLAVKILTFYEGEVGH
PNLPNAKVEQKINPKFSGGMNGYMYISGEPVQPAEVYSPIEDMEMILNNEVLSVFFKCPA
FHSHIPRKSKAVRFPRKSVRKQDILPPPVLWHEKSAVLGRIFSERSIHKSISGHRLAKLA
HELLSKCYNLKSQMPWGSMEPADHIGADGLTSQSNLEETVHVCGTGRNENCIDGSIPDNH
VGAEKWACHLNLEEMVCASRTEGDKNCFDGKAKKRIWSGCYGHSTVSVVDGSACSSNLEE
TVAVGGAGVDEICINIKSRKRRRKERKVRHTLENHVGAEELACPLNLGPTVCEVGTEADK
NYVDNGVPDNHIGETGASGLACVNGKSRKQRKKRKQSNAIVVPDNHEGAEDLAFPSNLLP
TVCEVGVRADKNCVDNGVPEKHIGETGANGLACANGVQGYNFVNGKSRKRKRKQRNVIVV
ADNHVGAKGLTRPSNLMPTVCDVATGADKNCVDNGVPEKQVGETGENGFAGANGVPDKNC
VDGKFRRQKGSEDRVSVDNHIGAEGLACTSNWGPTVDSGSGVPDNHVGDTEANGLALGVG
VPDQGCLNSKSRKRRRKRKQGKLACSLNSGPVICEVGTEADKSCAHNGVPDNNVGETGAN
LLACGSNLEEVCVSQTGGVEIHS
NT seq
3852 nt
NT seq
+upstream
nt +downstream
nt
atgggaataccggcattctacagatggctggtggagaggtacccgctcgcggtggcgacc
gtcatcgaagacgaaccccaccttttggacacgaccggaccgaacccaaacggcgtcgaa
ttcgataacctctacctcgacatgaatggcatcgtccacccctgctttcaccccgagggc
ctgccccctcccaagagctacgaagacgtcttcctcgccgtattcaactacatcgaccgc
atcttctccatcgtcaggccccgcaagcttctctacctcgcaatcgatggtgttgcaccg
cgagctaaaatgaatcagcagcggtcgaggcgttttcgggctgctaaggatgcagccgac
gaagtgacttgtgatcattctcaggccaatgggagtgagtgcaaactcgaagcagaagaa
gaaaggtcagcttctttggagcagtcgaagaagctggactcaaatgtaatcacgcctgga
actgaattcatggtgttgttgtcaatggctcttcgttattatatacatttgaggatgaat
agggatgccggatggcgggaaatcaaggtcattctttctgatgccaatgtacctggtgag
ggggagcataagataatgtcttacattcgcttgcaaaggaatcttccgggatatgatccc
aacactaggcattgtctgtatggattggatgctgatcttatcatgcttgcactagccacc
cacgaaatccattgctctgttctgagagaggatgtgcgcggagcatccccgaatgataaa
actttgaaacacgcaaaggattccttatcaataaatcgacaggaagaaagggggaattca
aagcaaatggaagtggttggcaagaatctagaagattatgtctcgaggcagaaatttcag
tttctcaacatatgggtccttcgggagtatttagcatttgacatgagaatccaaggcttg
aaatcgaaggcagacctagagcgccagattgatgattttgtcttcatgtgcttgtttgtt
ggaaatgactttctaccccacattccttctttggaaatatcggagggggctattgatctg
ctcatgatggtttataaaaaggaatttgttaacatgggcggttacctaactaattctttt
gaggtaaatttggaacgtgtggagaaatttgtccatgctgtgggatctcacgaatgtgca
atctttagaagacgtagccaggttggaaaggaaagagagttccgccttcgacgtttttca
agtaataagcatgtcagatgttcaagtaacctcatgagtcaaaatccaccagattccagt
gctgtgggggttcaaacaccaagccactgtacatccattggtgcaaatgcagttgaagac
aagattaagcttggagaaatgggttggaaggaaagattttatgctgaaaagtttgaggct
gaaagtgaagatgatcgcaagagaattcagagacatgcggtttttaaatatatcgaaggg
atatgttgggttatgcgttattactacgaaggagtctgctcctggcaatggttttaccct
tatcattatgctccatttgcttctgacttccatggtattgatcaattaaaaatcgaattc
acactaggggaacctttcaagccttttgatcagttgttgagtgtattgcctgctgcaagt
gcacatgctcttcctttgttttacaggaaactgatgacagatatgtcgtcacctttattg
gatttttacccaactgattttgagcttgatatgaatggaaaacgtttttcttggcaggct
atctgtaagttgccatttattgacgagtcacgccttctttcagagattgcaaatgtggag
cacacgctgacggatgaagaaagatgcagaaatagtttcagtctggatgtactatatgtt
cacatttcacatcctttagcagtgaagatacttactttctatgagggagaagttggtcat
ccaaatttacccaatgctaaagtcgagcagaaaattaacccgaaattcagtggtggaatg
aatgggtatatgtacatttctggagaacctgtgcagcctgcagaagtctattcaccaatt
gaggacatggagatgattttaaacaatgaagtattatctgtcttcttcaaatgcccagcc
ttccattctcacatccccaggaaatcaaaagcagtgagattccctcgtaagtctgtcagg
aagcaggacattttacctccgcctgttttgtggcatgagaagtcagctgtccttggacgt
atattttctgaacggtccattcataagtcaatctcaggccatcgtctagcaaaattagct
catgaacttctgtctaaatgttataatctgaagagccaaatgccatggggatctatggaa
ccggctgaccacattggtgcagatggattgacatcccagtcaaatttggaagaaactgtt
catgtgtgtgggactggacgcaatgaaaactgcattgatggtagcatcccagataaccac
gttggggcagagaagtgggcatgccatttgaatctggaagaaatggtttgtgcaagtagg
actgaaggtgacaaaaactgctttgatggcaaagctaagaagcggatatggagcggatgt
tatggccattccactgtcagtgtagttgatggatcggcatgttcttcaaatttagaggaa
acagtagctgtgggtggggctggagttgatgaaatttgcattaatatcaagtcgaggaaa
cgaagaagaaaggagcgtaaagtcagacacacattggaaaaccatgttggtgcagaggaa
ttggcatgccctttgaatttgggaccaacagtttgcgaggtagggactgaagctgataag
aattatgttgataatggagttccagataaccatattggtgagactggagcaagtggattg
gcatgtgttaatggaaaatctaggaaacagagaaagaaacggaaacagagtaacgctata
gttgttccggataaccatgaaggtgcagaggatttggcattcccttcaaatttgctgcca
acagtttgcgaggtaggagttagagctgataaaaattgtgttgataatggagtcccagag
aaacacattggtgagaccggagcaaatggattggcatgtgctaatggagtccaaggttat
aatttcgttaatggcaaatctaggaaacggaaacggaaacagcgtaatgttatagttgtt
gctgataaccatgtaggtgcaaagggtttgacaaggccttccaatttgatgccgactgtt
tgtgatgtagccactggagctgataaaaattgtgttgataatggagtcccagagaaacag
gttggtgagacaggagaaaatggatttgcaggtgctaatggagtcccagataaaaattgt
gttgatggcaaatttaggagacagaaaggaagcgaagatagggtttccgtggataaccac
ataggtgcggagggattggcttgcacttcaaattgggggccaacagttgatagtggaagt
ggagtcccggataaccatgttggtgatactgaagcaaatggattggcacttggtgttgga
gtcccagatcaaggttgtcttaatagcaaatctaggaaaaggagacggaaacggaaacag
ggaaagttggcatgctctttgaattcagggccagtaatttgtgaggtagggactgaagct
gataaaagttgtgctcataatggagtcccagataacaatgtgggtgagactggagccaat
ttattggcctgcggttcaaatttggaagaagtttgcgtgagtcagacaggtggtgtggaa
atacattcatga
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integrated database retrieval system
