Alnus glutinosa (common alder): 133861574
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Entry
133861574 CDS
T10577
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
aglu Alnus glutinosa (common alder)
Pathway
aglu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133861574
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aglu03019
]
133861574
03012 Translation factors [BR:
aglu03012
]
133861574
Enzymes [BR:
aglu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
133861574
Messenger RNA biogenesis [BR:
aglu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
133861574
Translation factors [BR:
aglu03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
133861574
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
R3H
DEAD
HA2_C
HA2_N
nSTAND3
ATPase
AAA_22
Ank_2
Ank_5
AAA_19
ABC_tran
AAA_25
Rad17
AAA_7
PhoH
Nup88
Motif
Other DBs
NCBI-GeneID:
133861574
NCBI-ProteinID:
XP_062153350
LinkDB
All DBs
Position
2:20017299..20043934
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AA seq
1240 aa
AA seq
DB search
MAKKKKQRKGDQNGNMDEATRLIIAEATTISISQQLQKFHESKDEVYKFEENLSNHERAV
VHVLCRKMGMTSKSTGRGIQRRVSVYKTKKKIDNAKGLDSLTYLTFSEEGKVVLQDLFTR
YPPDDGEVDNEMVGKKTEKIDKIRQKKDDIFCKPSMSRAEIAKKVESLSSKMEKIAYLKQ
VTEVRSKLPITSFRDVITSTIESHQVVLISGETGCGKTTQVPQFLLDYMWSKGEACKIVC
TQPRRISATSVAERICYERGGNVGDDIGYKIRLESKGGRNSSIVFCTNGILLRVLISSGA
GRSKREAGMKTGKQDFPDITHIIVDEIHERDRYSDFMLAILRDMLHSCPHLRLILMSATI
DAERFSQYFGGCPIIRVPGFTYPVKTYYLEDILSILKSKEYNHLDNTISSLPTEDTELTE
EDKLALDEAIYLAWTDDEFDPLLELVSSEGTQKVFNYQHSLTWVTPLMVFAGKGRVADVC
MLLSFGADCHLQAKDGSTALVWAERANQLETAEIIKKHLGSAISNSIEEQQLLDKYLGTV
NPELIDVVLIVQLIRKICIDSQDGAILVFLPGWEDINKTREKLIALPFFKNSSKYMVICL
HSMIPSAEQKKVFKRPPPGCRKIVLATNIAETAITIDDVVYVVDSGRMKEKSYDPYNNVS
TLQSSWVSKASAKQREGRAGRCQPGICYHLLSKLRAASLPEFQVPEIKRIPIEELCLQVK
LLDPNCKIEDFLQKTLDPPVFETIRNAVLVLQDIGALSVDEKLTELGEKLGSLPVHPLTS
KMLFFAILMNCLDPALTLACASDYRNPFTLPMLPKDKKRADAAKSELASLYGGHSDQLAV
IAAFECWKNARQRGQEARFCSEYFVSKSTMNMLSGMRKQLQNELIRNGFILDDISSCSLN
ARDPGILHAVLVAGLYPMVGRLRPPHKSGKRLIETAGGDKVRLHPHSTNYRLSSRKSDDC
PLIIYDEITRGDGGMVIRNCTVAGPLPLLLLATEIAVAPAKDDDNDDEDYGDDGSDDGAD
EDESDEDGMEISGGVREEKIMSYPDNSVTVIVDRWLFFGSTALDVAQIYCLRERLAAAIL
FKVTHPKTILPPVLGASIHAMACILSSDGLSGISVPLGAVDTLTSMVNATEIDKSAPGRR
KGVVQNSNGFLRSLMSHGTLQKSPSHHHNTRLPAPMGTAYLGDPSSHKVRPPLNPAGMNQ
CQRPASWVPGPSLDGDGLGMFGPHDPRGDSLKRQRGNWSR
NT seq
3723 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagaagaagaaacagaggaaaggagaccaaaacggcaacatggatgaagcaaca
aggctgatcattgccgaagctacgactattagcatatcccaacaactgcaaaagttccat
gaatcaaaagatgaagtttacaagtttgaagaaaacttgtcaaaccacgaacgtgcagta
gtgcatgtattatgcaggaaaatgggtatgacttccaagagtacagggcgtgggatccaa
cggcgtgtttccgtgtacaaaactaaaaagaagattgataacgccaagggtttggacagt
ctcacttatttgacattttcggaagagggaaaggtggttttacaggatttgtttactcga
tacccacctgatgatggagaggtggacaatgaaatggttgggaagaaaactgaaaaaatt
gataaaatacgacaaaagaaagatgatattttctgcaagccttcaatgagcagagcagaa
attgcgaagaaagtggagtcactttcttcaaaaatggaaaagattgcatatttgaagcag
gtcactgaagtgaggtctaagcttccaattacatccttcagggatgtcattacatcgaca
attgaatctcaccaggttgttctcatatctggtgagactgggtgtggaaagaccacgcag
gtccctcaatttcttctagattacatgtggagtaagggtgaggcttgtaaaattgtgtgt
actcaacctcgacgtatctcagcgacctcagttgctgagagaatctgttatgaaagagga
gggaatgttggagatgatattggatacaagatacggttggaaagcaagggtggaaggaac
tcatcaattgtgttttgcacaaatgggattctattgagggtgttaatttctagtggtgct
ggtaggtcaaagagagaagctggaatgaaaactggaaaacaagattttccagacataact
cacattattgtggatgaaattcatgaaagggatcgctactctgatttcatgttggcaatt
ctcagagacatgcttcattcatgtcctcatctgcgtttgatacttatgagtgctactatt
gatgctgaacgattttcacaatattttggtggctgcccaatcatccgtgtccctgggttc
acttatcctgttaaaacttattatttggaggacatactttctatcctgaaatcgaaggaa
tacaatcatctcgataatactatatccagtctccctactgaggacactgagttaacagag
gaagataagcttgctttagatgaagctatttatctggcttggactgatgatgagtttgat
ccactcctagaattagtttcttctgagggaacccaaaaagtgttcaattaccagcattca
ttgacttgggttacaccattgatggtatttgctggaaagggtagggtggctgatgtttgc
atgctcctatcttttggggcggactgccatttacaggccaaggatggatctactgcactg
gtctgggctgaacgggcaaaccaactggaaactgctgaaataattaaaaaacacttggga
agtgccatttccaactccattgaagaacaacaattacttgataagtatctaggaacagtc
aatcctgaacttattgatgttgttcttatagtgcagttaataaggaaaatatgtattgat
tcacaagatggagctatacttgttttcctgccaggatgggaggatataaataaaaccagg
gagaaattaattgcgttgccgttttttaaaaattcttccaagtatatggtaatatgtctt
cattctatgattccatctgcagaacaaaagaaggtttttaaacgtccacctcctggttgc
cgcaaaattgttcttgcaaccaatattgctgaaactgccattaccattgatgatgttgtg
tatgttgttgacagcggtcgtatgaaggaaaaaagttatgatccttataataatgtttca
actcttcaatcttcttgggtctcaaaagcaagtgccaagcaaagagaaggacgtgcaggc
cgctgtcaacctggaatatgttatcatctcttgtcaaaactccgagcggcttctttgcca
gaatttcaagttcctgaaattaagagaattccaattgaggaactatgtctgcaggtaaaa
ttgcttgatccaaattgcaagatagaagatttcttgcagaagacattagatcctccagtt
ttcgagaccatacgaaatgcagttttagttcttcaagatattggggctttgtcagttgat
gaaaagctgactgaacttggggaaaagctaggttctctgcctgtccatccattgacaagc
aagatgcttttctttgctatattaatgaattgccttgacccagccttgactctggcatgt
gcctctgactatagaaatccatttacacttcccatgttaccaaaagacaagaagagagct
gatgctgctaaatctgagcttgcctcattgtatggtgggcacagtgatcagctagccgta
atagctgcatttgagtgctggaagaatgctaggcaaaggggtcaagaggcacggttctgt
tcggagtattttgtctccaaaagcactatgaatatgttgtctggcatgcgtaagcagctc
caaaatgaactaatccggaatgggtttattcttgatgatatttcaagttgtagcttgaat
gcacgtgacccaggtatactccatgcagtgcttgtggctggtttgtatccaatggtgggg
agattgcgtccgccgcataaaagtggaaaacgacttatagagactgctggtggtgataaa
gttcgtttgcaccctcattccactaattataggctgtcatcaaggaaaagtgatgattgt
cctttgattatatatgatgagataacccgcggggatggaggtatggtcataaggaactgt
actgtggctgggccgcttccactattattgcttgcaacagagattgctgttgctccagca
aaagatgatgacaatgatgatgaagactatggtgatgatggtagtgatgatggtgccgat
gaagatgaaagtgatgaagatggtatggagatctcaggtggagtgcgcgaagagaagatt
atgtcgtatcctgataattcagttacagtcattgtggatcggtggcttttctttgggtca
acagcacttgatgttgctcaaatttactgcttgagagagcgattagctgcagcaatctta
ttcaaagtaacacatccaaagaccattcttcctcctgttttaggggcatctatacatgct
atggcctgcattctatcatcagatgggctatccggaatttcagtgccattaggggcagtg
gacacattgacttcaatggtaaatgctactgagattgacaagtctgccccagggaggaga
aaaggggtggtacagaattcaaatgggttccttagatcgcttatgagccatggcacactc
cagaaatccccttcccatcatcacaatactagattacctgcaccaatgggaacagcctat
ttgggcgatccttcaagtcataaagttcggccgccacttaatccagctggcatgaaccag
tgtcagagacctgcatcatgggttcccggtcccagtttagatggtgatggtttgggaatg
tttggcccgcatgatccaaggggagactctcttaagcggcagcgggggaattggtctaga
taa
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