Alnus glutinosa (common alder): 133862242
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Entry
133862242 CDS
T10577
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A
KO
K12856
pre-mRNA-processing factor 8
Organism
aglu Alnus glutinosa (common alder)
Pathway
aglu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133862242
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aglu03041
]
133862242
Spliceosome [BR:
aglu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
133862242
Complex C
U5 SnRNP specific factors
133862242
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
133862242
NCBI-ProteinID:
XP_062154000
LinkDB
All DBs
Position
3:complement(27120318..27132863)
Genome browser
AA seq
2349 aa
AA seq
DB search
MWNSGQIAPPGTTGSSILPPPAAQPSYTVLPSPAEAEARLEEKARKWQQLNSKRYSDKRK
FGFVETQKEDMPPEHVRKIIRDHGDMSSKKYRHDKRVYLGALKFIPHAVYKLLENMPMPW
EQVRDVKILYHISGAITFVNEIPWVVEPIYLAQWGTMWIMMRREKRDRRHFKRMRFPPFD
DEEPPLDYADNLLDVDPLEPIQLEMDEEEDSAVYTWFYDHKPLVKTKLINGPSYRKWHLS
LPIMATLHRLAGQLLSDLIDRNYFYLFDMESFFTAKALNMCIPGGPKFEPLYRDMEKGDE
DWNEFNDINKLIIRSPLRTEYRIAFPHLYNNRPRKVKLCVYHTPMVMYIKTEDPDLPAFY
YDPLIHPITSTNKERSEKKNRDDEDDDDDFVLPEGVEPFLRDTQLYTDTTAAGISLLFAP
RPFNMRSGRMRRAEDIPLVSEWYKEHCPPSYPVKVRVSYQKLLKCFVLNELHHRPPKAQK
KKHLFRSLQATKFFQTTELDWAEAGLQVCKQGYNMLNLLIHRKNLNYLHLDYNFNLKPVK
TLTTKERKKSRFGNAFHLCREILRLTKLVVDANIQFRLGNVDAFQLADGLQYTFSHVGQL
TGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLRGIVPLL
ERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDVLDAMPEGIKQNKART
ILQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNVAHYNRERIKRGATVD
KTVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTTVHWLESRKFSPIPFP
PLSYKHDTKLLILALERLKESYSVAVRLNQLQREELGLIEQAYDNPHEALSRIKRHLLTQ
RAFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKRHLFPNWIKPADSEPP
PLLVYKWCQGINNLQGIWDTSEGQCVVMLQTKFEKFFEKIDLTMLNRLLRLVLDHNIADY
VTAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDLLLLGLTRATEIAGPPQMP
NEFITYWDTKVETRHPIRLYSRYIDRVHILFRFTHEEARDLIQRYLTEHPDPNNENMVGY
NNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENSFVSVYSKDNPNLLFS
MCGFEVRILPKIRMSQEAFSNTRDGVWNLQNEQTKERTAVAFLRVDDEHMKVFENRVRQI
LMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENKIQTRIKIGLNSKM
PSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSQQTDVGVTHFRSGMSHEEDQLIPN
LYRYIQPWESEFIDSQRVWAEYALKRQEAQAQNRRLTLEDLEDSWDRGIPRINTLFQKDR
HTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGVEGILEH
TLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANV
YVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVLDQELDALEIE
TVQKETIHPRKSYKMNSSCADILLFAAHRWPMSKPSLVAEPKDVFDQKASNKYWIDVQLR
WGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGLDLAYNLHSAFGNWFPGSKPLLQ
QAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWFVDDTNVYR
VTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKWKTAEEVAA
LVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKIEKFGDLIL
KATEPQMVLFNIYDDWLKSISSYTAFSRLILILRALHVNNEKAKMLLKPDKTIVTEPHHI
WPSLTDDQWMKVEVALRDLILSDYAKKNNVNTSALTQSEIRDIILGAEITPPSQQRQQIA
EIEKQAKEASQLTAVTTRTTNVHGDELIVTTTSPYEQAAFGSKTDWRVRAISATNLYLRV
NHIYVNSEDIKETGYTYIMPKNILKKFICIADLRTQIAGYLYGISPPDNPQVKEIRCIGM
PPQWGTHQQVNLPAALPEHDFLNDLEPLGWMHTQPNELPQLSPQDLTTHAKILESNKQWD
GEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDTGSNPHGYLPTHYEKVQMLLSDRF
FGFYMIPDNGPWNYNFMGVKHAPSMRYGVKLGTPREYYHEDHRPTHFLEFSNLEEGETIA
EGDREDTFT
NT seq
7050 nt
NT seq
+upstream
nt +downstream
nt
atgtggaacagcggccagattgcgccgccggggaccactggttcgtcgatactgccgcct
ccagcggcgcagccctcgtacacggtgctgccgtcgccggccgaggctgaggcgcggctc
gaggagaaggccaggaaatggcaacagctcaattcgaagcgctacagcgacaagcgcaag
ttcgggttcgtcgagacgcagaaggaggacatgccacctgagcatgtcaggaagatcatt
agagaccatggggacatgtcctccaagaagtatcgtcatgataaacgcgtctatcttggg
gcccttaaattcattccacatgcagtttacaagcttcttgagaatatgcctatgccatgg
gagcaggtccgtgatgtgaagattttgtaccatatttctggggcaattacatttgtgaat
gaaataccatgggttgttgaacctatatacctggctcagtggggtacaatgtggatcatg
atgcgaagggagaagagagatcgacggcatttcaagagaatgcgctttccaccttttgat
gacgaggaaccaccattagactatgctgataatcttttagatgttgatcctctggagcct
atccaattagagatggatgaagaagaggattctgctgtatatacctggttttatgaccat
aagcctcttgtgaaaacaaaactcataaatggtccaagttaccgtaaatggcatctctcc
cttcctatcatggcgactcttcatcggcttgcaggacagctgctttctgatttaattgac
agaaattatttctacttgtttgacatggagtcattttttacagctaaagcattgaacatg
tgtatacctggtggccctaaatttgagcctttgtaccgtgacatggagaaaggggatgag
gattggaacgagttcaatgatatcaacaagctaattattcggtcacctctaaggacagaa
tatagaattgcattccctcatctctataacaataggcccaggaaagttaagctttgtgtg
taccacactcccatggtcatgtacataaaaaccgaggatcctgatttacctgcattttat
tatgatcccttgatacatccaataactagtactaacaaggagcggtctgaaaagaaaaat
cgtgatgatgaggatgatgatgatgattttgtcttgccggaaggggtggaaccttttctg
agagacactcaactttatactgacactacagctgctggtatttccttattgtttgcccca
cgtccttttaacatgagatctggtcggatgagaagggcagaagatataccactcgtgtcg
gagtggtataaggagcattgtcctccatcctatccagttaaagttcgagtcagctatcaa
aaattgctaaaatgctttgtattgaatgaactgcatcacagacctcccaaggctcaaaag
aagaagcacttgttccgatctttgcaagcaacaaagtttttccaaaccacagaacttgat
tgggctgaagctggtcttcaagtttgtaagcagggatataacatgctaaatctgcttata
cataggaaaaatttgaattacctccaccttgattataatttcaatctgaagcctgtgaag
accctcactacaaaggagcgtaagaagtcacgatttggtaatgctttccatctctgtcgt
gaaattttgcgtttgacaaagcttgtagttgatgccaatatccagttccgcttgggtaat
gtggatgccttccaacttgccgatggtttgcaatatacattttctcatgttggtcaactt
actggcatgtaccgttacaagtataggcttatgcggcagatcagaatgtgtaaagacttg
aaacacttgatttactatcggttcaatactggtccagttgggaaaggacctggatgtggg
ttttgggcaccaatgtggagggtgtggttgttctttcttcgcggtatagtgcctctcctg
gaacgatggttagggaatttacttgcacggcaatttgagggacgccattcaaaaggagtg
gcgaagaccgttaccaaacaacgtgttgaaagccacttcgatttggagcttagagcagct
gttatgcatgacgttcttgatgcgatgccagagggcattaagcagaataaagctagaact
atattgcagcatcttagtgaggcgtggcgttgttggaaagcaaatattccttggaaggtt
ccaggtttgcccgttcccattgagaacatgattcttcgttatgtcaagtcaaaagcagac
tggtggacaaatgttgctcactataaccgggagcgtataaaaagaggagcgacagtcgac
aaaacagtttgtcggaagaatcttggaagactgactcgcctttggttgaaggcagaacag
gaacgacaacacaactatttgaaagatggtccatatgtcacaccagaagaagcggttgcc
atttacacgacgacagtacattggttggagtcaagaaagttctctcccattccgttccct
ccactgtcttataagcatgacacgaaactacttatccttgctctggagagattgaaggaa
tcttacagtgtggctgtgagattaaaccagcttcaaagagaagagttgggtctcattgaa
caagcttatgataacccacatgaagcactgtctcgaattaagcgacacctactcactcag
cgtgctttcaaagaagttggcatagagtttatggatttgtacagctatctcattccagtt
tatgagattgagcctcttgagaagattacagatgcatatcttgaccaatatttatggtat
gaaggtgacaaacgtcatctctttccgaactggatcaagcctgcagattccgagcctccc
ccacttttggtttataaatggtgtcagggaataaacaatttacaaggtatatgggacaca
agtgaggggcaatgtgtagtgatgcttcaaacaaagtttgagaagttctttgagaagatt
gacttgacgatgttaaacaggctcttgcgattggttcttgaccacaacattgctgattat
gtcactgcaaagaacaatgttgtgttgtcgtataaggatatgagtcacacaaattcgtat
ggtcttatacgtggactccagtttgcttcttttgttgttcagtattatgggcttgtgctg
gatctcttgcttcttggattgactcgagctactgagattgctggtcctccacagatgcct
aatgagttcatcacttattgggacactaaagttgagacccgacacccaattcggctatat
tctcgatacatagacagggtccatatattgttccgcttcacccatgaagaggctcgagac
cttatccagcggtatcttacggagcatcctgatcctaacaatgaaaatatggttggatat
aacaataagaagtgctggccaagagatgcgagaatgaggctcatgaaacatgatgtaaat
cttgggaggagtgttttctgggatatgaagaaccgtcttcctcgaagcatcacaacattg
gagtgggagaacagctttgtttctgtttacagcaaggataatccgaacttgctcttcagc
atgtgcgggtttgaagttcggatacttcctaaaataagaatgagccaggaagcattcagt
aatacaagagatggtgtctggaatctgcagaatgaacagaccaaagaacggactgcagtt
gctttcttgcgggttgatgatgaacacatgaaggtgtttgagaatcgtgtgaggcagatt
cttatgtcttcaggatccacaacatttacaaaaattgtcaataaatggaatacagccctg
ataggtctcatgacttatttccgtgaagccactgtacatactcaagagctgttagatttg
ctggttaaatgtgaaaataagattcaaacccgtattaagattgggttgaactcaaagatg
cctagcaggttccctcctgtcattttctacactccgaaggaaattggaggacttggcatg
ctctccatgggtcacatattgattccacaaagcgatctccgttacagccagcagacagat
gttggtgtaactcactttaggagtggaatgagtcatgaagaggaccagctgattcccaat
ctttatcgatatatacagccatgggagagtgagttcatagattcacagcgtgtttgggca
gaatatgcactgaagagacaggaagctcaggcacaaaataggcgtttgacccttgaagat
ttggaagattcatgggacaggggaattccacgtataaatactttgtttcagaaggatcga
cacactctggcatatgacaaaggatggagggtgcgcacggactttaaacagtatcaagtt
ttaaaacagaaccctttctggtggacacaccagaggcatgatggtaaactttggaacttg
aacaactacagaactgatgtcatccaagctttgggaggtgttgagggaattcttgagcat
accttattcaaaggaacatactttccaacttgggaaggtctcttttgggaaaaggcatct
ggctttgaggaatcaatgaagtataagaagctgacaaatgctcagagatctggtctcaac
caaatcccaaaccgtaggttcactctttggtggtcacctactataaatagagcaaatgtt
tatgtgggtttccaggtccagttggatctaactggaatcttcatgcatgggaagatccct
accttgaagatatcactgattcagatattccgtgctcatttgtggcaaaagattcatgag
agtgttgttatggatctttgtcaagttttggatcaggagttggatgctttggaaattgag
actgtgcagaaggaaacaatccatccacggaagagttacaaaatgaacagctcttgtgca
gacattcttctctttgctgctcatagatggccaatgtcaaaacctagtcttgtggctgag
ccaaaggatgtgtttgatcagaaagcaagcaataagtactggatagacgtgcaactccgc
tggggagattatgactctcacgatattgagcgctacacgcgggccaaatttatggattat
acaacagacaatatgtctatatatccatcccctactggggtgatgattggacttgatttg
gcctataacttgcattctgcattcggtaattggtttcctgggtcaaagcctctactgcaa
caggcgatgaataagatcatgaagtcaaatccagccttgtacgtcttgagggagcggata
agaaaaggtttacagttgtattcttctgagcccactgagccgtatttgtcatctcagaac
tatggagagatcttcagcaatcaaattatatggtttgttgatgacactaatgtgtatcgt
gttactattcataagacatttgaaggaaatcttacgacaaaacccatcaatggtgccatc
tttatattcaatccaaggaccgggcagctgtttctgaaggtcatccacaccagtgtgtgg
gcagggcagaagcgtcttggtcagttggctaagtggaaaacggcagaagaagttgctgca
cttgtgaggtctttgccagttgaagaacaaccgaagcaaattattgtgactcgtaaagga
atgctggatcccttggaggtccatttgctggatttccccaacatagttataaaaggtagt
gagctgcagcttccgttccaggcatgcttaaagattgagaaattcggtgatctgattttg
aaggctacagagccacaaatggttctttttaacatttatgatgattggttgaaaagtatt
tcatcatacactgcattctcccggctcattctgatcttgcgcgcacttcatgtcaacaat
gagaaggcgaagatgttactaaagcctgacaaaacaatcgtcactgagccgcaccacatc
tggccttctctcactgatgatcaatggatgaaggttgaggttgctctaagagatctcata
ctctcagactatgcaaagaagaacaatgtgaatacatcagctctgacacagtctgagatc
cgtgatatcatacttggagctgagattactccaccttctcaacagagacagcagattgct
gagattgagaaacaggcgaaagaagcaagtcagctgacagctgtgacaacaaggactaca
aatgtgcatggtgatgaactgattgtcaccaccacaagtccatatgagcaagctgcattt
ggatctaaaactgattggcgtgtgagagcaatatcagcaacaaatctctatcttcgtgtc
aatcatatttatgtgaattcagaggatataaaggaaactggatatacttatatcatgcca
aagaacatcttgaagaagtttatctgcatagcagatctgcggacacaaattgctggttac
ttgtatggtataagccctcctgacaacccacaggtgaaggaaatccgttgcattggcatg
ccaccacaatggggaacccatcagcaagttaatcttccagcagctctcccagagcatgat
ttcctgaatgatctggagcctttgggatggatgcatactcaacctaatgaacttccccag
ttatccccacaggatctcacgactcatgctaagatcttagagagcaacaagcaatgggat
ggggagaagtgcattattttgacttgcagtttcactcctggttcctgctccttaacggcg
tataagctgacaccatcggggtatgagtgggggcgcgtgaacaaggacaccggaagtaat
cctcatggctaccttcccactcattacgagaaggtccaaatgctcctgagtgaccgcttc
tttggtttctatatgattccggataatggtccatggaattacaacttcatgggggtgaaa
cacgcacctagtatgaggtacggggtgaagctcgggacgcctcgtgaatattaccatgag
gaccacaggccaactcatttcctggagttcagcaatttggaggagggagagactattgct
gaaggagatcgcgaagataccttcacttag
DBGET
integrated database retrieval system
