Alnus glutinosa (common alder): 133862561
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Entry
133862561 CDS
T10577
Name
(RefSeq) spliceosome-associated protein 130 A
KO
K12830
splicing factor 3B subunit 3
Organism
aglu Alnus glutinosa (common alder)
Pathway
aglu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133862561
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aglu03021
]
133862561
03041 Spliceosome [BR:
aglu03041
]
133862561
03036 Chromosome and associated proteins [BR:
aglu03036
]
133862561
Transcription machinery [BR:
aglu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
133862561
Spliceosome [BR:
aglu03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
133862561
Complex B
133862561
Complex C
U2 SnRNP specific factors
133862561
Chromosome and associated proteins [BR:
aglu03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
133862561
TFTC complex
133862561
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
WDR55
Motif
Other DBs
NCBI-GeneID:
133862561
NCBI-ProteinID:
XP_062154376
LinkDB
All DBs
Position
3:complement(33806850..33815196)
Genome browser
AA seq
1211 aa
AA seq
DB search
MYLYSLTLQRATGIVCAINGNFSGGKVQEIVVARGKILELLRPDDNGKIRTLLSVEIFGA
IRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNVFDKIHQETFGKSGCRRIVPGQYL
AIDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGVDCGFDNPI
FAAIELDYSEADQDSTGQAASDAQKNLTFYELDLGLNHVSRKWSEPVDNGANLLVTVPGG
GDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRLDLPAERGVLIVSAAVHKQKTMFFFLLQ
TEYGDIFKVTLDYDNDHVTELKIKYFDTFPVTASMCVLKSGHLFAASEFGNHSFYQFRGI
GDDADVESSSATLMETEEGFQPVFFQPRRLKNLLRIDQVESLMPIMDMKVVNLFEEETPQ
IFTLCGRGPRSSLRILRPGLAISEMAVSELPGVPSAVWTVKKNVTDEFDAYIVVSFSNAT
LVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWRTPGKR
TISKVGSNRLQVVIALSGGELVYFEVDITGQLIEVDKHEMSGDVACLDIAPVPEGRQRSR
FLAVGSYDNTIRILSLDPDDGMQILSVQSVSSAPESLLFLEVQASVGGEDGADHPASLFL
NSGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRAPKLFSIIVRGKRAMLCLSSRPWLGYIH
QGHFLLTPLSYETLEYAASFASDQCEEGVVAVAGDALRVFTIERLGETFNETVIPLRYTP
RKFVLQPKRKLLVIIESDQGALTAEEREAAKKESFEAAGTAENGNGEQMENGGDEDKDDP
LSDEHYGYPKAESDKWVSCIRVLDPKTASTTCLLELQDNEAAFSICTVNFHDKEYGTLLA
VGTAKGLQFWPKRSLAAGFIHIYRFIEDGKSLELLHKTQVEGVPTALCQFQGRLLVGMGS
VLRLYDLGKRRLLRKCENKLFPNTIVSIHTYRDRIYVGDIQESFHYCKYRRDENQLYIFA
DDSVPRWLTASYHIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGA
PNKVEEIVQFHAGDVVTCLQKASLIPGGGECLIYGTVMGSLGALLAFTSRDDVDFFSHLE
MYMRQEHPPLCGRDHMGYRSAYFPVKDVIDGDLCEQFPTLPLDLQRKIADELDRTPGEIL
KKLEEVRNKII
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atgtacctctacagcctcactctccagcgagccactggcatagtttgcgccatcaacggc
aacttctccggcgggaaggtccaagagatcgtcgtcgcacgtggcaagattctggagctt
ctccgacccgacgataacggtaagatccgaacccttctctccgttgaaatcttcggtgcc
attaggtctttagctcagtttaggctcaccggggctcagaaagactatatcgtggttggg
tccgactcgggtcggattgtaatcctcgagtacaataaggaaaagaatgtgttcgataaa
attcaccaagaaactttcgggaaatcggggtgtcgtaggatagttccgggccagtacttg
gccatcgatcccaagggtagggcggtgatgattggggcttgtgagaagcagaagcttgtt
tatgtgttgaatagggatacggcggcaaggctgactatttcttcgccgttggaggcgcac
aagtcgcacacgatagtgtattccatctgcggggtggactgcgggtttgataacccaatt
tttgccgccattgagttggattactcggaggcggaccaggattcgactgggcaggcagcg
agtgacgcccagaagaatttgaccttttatgagcttgatttaggtcttaaccatgtgtct
agaaagtggtccgagccagttgataatggtgcgaatttacttgttactgttcctggagga
ggggatgggccgagtggtgtgttggtttgtgcggaaaattttgtgatatataagaatcag
ggacacccggacgttagggctgtgattcctaggcgtttagatttgcctgctgagcgtggg
gtccttatagtttcagcagcagtgcataagcagaaaacgatgttcttctttctgttgcaa
acggagtatggggatatttttaaggttactttggactatgacaatgaccatgttacggaa
ttgaagatcaagtattttgatacctttccagttactgcttccatgtgtgtattgaagtca
gggcacttgtttgctgcttctgaatttggaaatcattctttctatcagttccgggggata
ggtgatgacgctgatgttgagtcttcgtcagctacattgatggaaactgaagaaggtttc
cagccggtgtttttccagcccagacgacttaagaaccttcttagaattgaccaagttgag
agcttgatgccaataatggacatgaaagttgtaaatctctttgaagaagagacacctcag
atatttacactttgtgggcggggtcctcgttcatccctaagaatcttaagacctggtttg
gccattagtgagatggctgtgtcggagcttcctggcgtaccaagtgcagtttggactgtg
aaaaagaatgtcactgatgagtttgatgcgtacatagttgtgtcattctcaaacgcgact
ctcgttctttccattggtgagacagttgaagaagttagtgatagtgggtttcttgatact
accccttcacttgctgtttctttgataggtgatgactctctcatgcaagttcatcccaat
ggcattaggcatattagggaggatggccgtatcaatgagtggaggactcctggaaagagg
acaatttctaaggttggctctaacagactacaagtggtcattgcacttagtgggggtgaa
cttgtttattttgaggtggatatcactggtcaactgattgaggtggataagcatgaaatg
tcaggtgatgtggcttgtttggacattgcccctgtacctgaagggaggcagaggtctcgt
ttccttgcggttggttcatatgacaacacgattcgtatcttatcattggaccctgacgat
ggtatgcagattctgagtgtgcaaagtgtttcttcagctccagaatctctccttttcctt
gaagtccaggcatcagtaggtggggaggatggtgctgaccatcctgccagcctttttctt
aattctggtttacagaatggggttctattcagaacagttgtagatatggtgactggtcag
ctttctgattcccggtctcgattcttgggactgagagccccaaaactcttttctatcatt
gtaagagggaagcgtgcaatgctttgcttgtcaagtcgaccttggctcggttatattcac
caaggacattttcttttaactcccctatcatatgagactcttgaatatgcagcatcattt
gcctctgaccaatgcgaggaaggtgttgttgctgttgctggtgatgctttgagggtgttt
actattgagaggctgggagaaacatttaatgaaactgtgattcccctaaggtacacacca
agaaagtttgtgcttcaacccaagcgaaaattgctggtaattattgagagtgatcaagga
gcattgacagctgaagagcgtgaagctgcaaaaaaggagagctttgaggctgctggaacg
gctgaaaatggtaatggtgagcagatggagaatggtggtgatgaggacaaagatgatccc
ctctcggatgagcactatggctatcccaaggcagagtcggacaagtgggtttcttgcatc
agagttcttgacccaaagacagcaagtacaacttgtctgctggagcttcaggacaatgaa
gctgcattcagcatatgcactgtgaatttccatgataaggagtatggaactctcttagcc
gttggtacagcgaagggactacagttttggcccaaaagaagtttagctgctggttttatt
catatttataggtttatagaggatggaaaatcacttgaattattgcacaagacacaagtg
gaaggtgtccctactgcattgtgccagttccagggaagattacttgtgggtatgggatct
gtgctcagattatatgatttgggcaagaggagattgcttagaaaatgtgagaacaagctg
ttccccaacactattgtctccattcacacttatcgtgatcggatatatgttggtgacatt
caagagtccttccattactgcaagtatagacgggatgagaatcaactgtacatatttgcc
gatgattctgttccaagatggcttactgcatcataccacatagattttgacaccatggca
ggcgcagacaagttcgggaacatctattttgtgcgattaccgcaggatgtttcagatgag
atagaagaagatccaactggtgggaaaataaaatgggagcaggggaaattgaatggagct
ccaaacaaggtagaggagatagtgcagtttcatgctggtgatgtggtcacttgtttgcag
aaggcatctttaattccaggtggtggagagtgcctcatatatggcacagtgatggggagc
ttgggggcattgctagcattcacgtcccgtgacgatgttgacttcttttctcacttggag
atgtatatgaggcaggaacatccacctttgtgtggaagagatcatatgggttatagatct
gcttattttccagttaaggatgtgattgatggagatctatgtgagcagttcccaacattg
cctttggatttgcagagaaaaattgcggatgaattggatagaactcctggagagatattg
aagaaactcgaagaagttcgaaataagatcatttga
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