Alnus glutinosa (common alder): 133862922
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Entry
133862922 CDS
T10577
Name
(RefSeq) polyadenylate-binding protein 4
KO
K13126
polyadenylate-binding protein
Organism
aglu Alnus glutinosa (common alder)
Pathway
aglu03015
mRNA surveillance pathway
aglu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
133862922
09123 Folding, sorting and degradation
03018 RNA degradation
133862922
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aglu03019
]
133862922
03041 Spliceosome [BR:
aglu03041
]
133862922
Messenger RNA biogenesis [BR:
aglu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
133862922
mRNA cycle factors
Stress granule specific factors
133862922
Spliceosome [BR:
aglu03041
]
Complex C
Other components
Complex C specific factors
133862922
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_occluded
RRM_7
RRM_Nup35
RRM_3
RBD_DGKtheta
DUF5062
HPS3_C
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
133862922
NCBI-ProteinID:
XP_062154825
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All DBs
Position
3:4203680..4209750
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AA seq
650 aa
AA seq
DB search
MAQVQVQSQPPVSNGAVTNGVGQFVSTSLYVGDLDQNVTDSQLYDFFSQMGQVISVRVCR
DLSTRRSLGYGYVNYSNTQEAARALDALNFTPLNGKPIRIMYSYRDPSIRKSGTGNIFIK
NLDKAIDNKALHETFSSFGNILSCKIATDQSAQSKGYGFVQFDNEESAKNAIEKLNGMLL
NDKQVFVGPFLRKHERDSATDKSKFNNVYVKNLSESTSDDDLKKSFGEYGTITSAVVMRD
ADGKSKCFGFVNFENSDDAARSVEALNGKKFEDKEWYVGKAQKKYERELELKGGVEQNLK
EKVDKYEGLNLYVKNLDDSLTDDKLRELFSEFGTITSCKVMCDPNGMSRGSGFVAFSTAE
EASRALLEMNGKMVVSKPLYVALAQRKEDRKAKLQAQFSQIRPAAVTLPVAPRMPLYQPG
APGLGQQLFYGQGPPAIIPPQPGFGYQQQLVPGMRPNFFVPMVQPGQQNQRPGGRRSGGG
MGQQNQQALPLMQPQMLPRGRAYRYPPGRNMPDVSMTGVPGGMLSIPYDMGGMAFRDGTF
SQSMGTGALATALANSLPDQQRTLLGENLYPLVDQLEHENAAKVTGMLLEMDQTEVLHLL
ESPEALKVKVSEAMEVLRNVNQQQQQQQQQQGNTPNDQMAALSLSDSLVS
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atggcccaggtgcaagtgcagtctcagcctccggtttcaaacggcgccgtcaccaacgga
gtgggccagttcgtgtccacgtctttgtacgtcggagatcttgaccagaacgtgaccgac
tcgcagctctacgactttttcagccaaatgggccaggtgatctcggtccgggtctgcagg
gacctgagcacccggcggtcactgggctacggttatgtcaattacagcaacacccaagaa
gcggcacgggcattggatgctttgaattttactcctctcaatggcaagccgattagaatt
atgtattcttatcgagaccctagcattcgcaaaagtgggacagggaacatatttattaag
aatttggacaaggccattgacaacaaagcactgcatgagacattttcatcattcgggaat
atcttatcttgcaagatagctactgatcagtcggctcagtctaaaggatatggttttgtg
caatttgataatgaggagtctgctaaaaatgcgatcgaaaagctgaacggcatgcttttg
aatgacaaacaagtttttgttggaccctttcttcgtaagcacgagagagattctgctaca
gataaaagcaaattcaacaatgtgtatgtaaaaaatttgtcagaatcaacctctgatgat
gatctgaagaaatcttttggtgaatatggaactattaccagcgctgtagttatgagagat
gcagatggaaaatctaaatgttttggatttgtcaacttcgagaactcagatgatgctgct
cgatctgttgaagctctcaatgggaagaagtttgaagataaggagtggtatgttgggaaa
gcccagaaaaaatatgaaagagagcttgaattgaaagggggagtagagcaaaatttgaag
gagaaggttgacaaatatgaaggactgaatttatatgttaaaaacctggatgatagcctc
actgatgataagctaagggaattgttctcagaatttggtacaattacttcatgcaaggtt
atgtgtgatcctaatggtatgagtagaggatcgggatttgttgccttctcaactgctgaa
gaagcatctcgagctctcctggagatgaatggtaaaatggttgttagcaaaccattgtat
gttgcccttgcccaacgtaaagaagatagaaaagcaaagttgcaggcacagttttcacaa
attcgtcctgctgcagtgacacttcctgttgcccctcgtatgcccttgtatcagccaggt
gctcctggtcttggacagcaactattctatggtcaaggccctccagctattatacctccc
caacctggatttgggtatcagcagcaattagtccctgggatgaggccaaacttttttgtc
ccgatggtccaaccaggtcagcagaaccagcgtccaggcggcaggcgatcaggaggaggg
atgggacaacagaaccagcaagcactcccgctaatgcagccacagatgcttcctagggga
cgtgcctatcgttaccctcctggtcgtaacatgcctgatgtttccatgactggtgttcct
gggggtatgctctctattccgtatgacatgggtggaatggcatttagagacggtacattt
tcacaatccatgggaactggtgctttggctactgcacttgctaattcactacctgatcag
cagaggacattgctgggtgaaaatttatacccacttgtggaccagttggagcatgaaaat
gcagcaaaggtgacaggcatgctcctggagatggaccagactgaggttttgcatttactg
gaatcaccagaggccttaaaagtgaaggtttcagaggccatggaggttttaaggaatgtc
aatcagcagcagcagcagcagcagcagcagcaaggcaatactccgaatgatcagatggcc
gcactgtctcttagtgacagccttgtttcttga
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