Alnus glutinosa (common alder): 133863029
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Entry
133863029 CDS
T10577
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
aglu Alnus glutinosa (common alder)
Pathway
aglu03013
Nucleocytoplasmic transport
aglu03015
mRNA surveillance pathway
aglu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133863029
09122 Translation
03013 Nucleocytoplasmic transport
133863029
03015 mRNA surveillance pathway
133863029
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aglu03019
]
133863029
03041 Spliceosome [BR:
aglu03041
]
133863029
Enzymes [BR:
aglu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133863029
Messenger RNA biogenesis [BR:
aglu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
133863029
Spliceosome [BR:
aglu03041
]
Complex C
Other components
EJC/TREX
133863029
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
133863029
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Helicase_C_2
Motif
Other DBs
NCBI-GeneID:
133863029
NCBI-ProteinID:
XP_062154980
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All DBs
Position
3:complement(26520611..26530062)
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AA seq
427 aa
AA seq
DB search
MGEVKDNDYEEELVDFEDDDPKAPDSASARPLADSVKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALIL
CHTRELAYQICHEFERFSTYLPDIRVAVFYGGVSVKIHKDMLKNECPHIVVGTPGRILAL
GRDKDLGLKNVRHFVLDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVC
KKFMQEPMEIYVDDETKLTLHGLVQHYILLKEGEKNRKLNDLLDALDFNQVVIFVKSVSR
AAELNKLLEECNFPSICIHSGMAQEERLKRYKNFKEGQSRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSDVLNQVQSRFEVDIKELPEQID
TSTYMPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaagtgaaggacaacgactacgaggaagagctcgtcgacttcgaagatgatgac
cccaaggcccccgactccgcctcagctagacccctagctgattccgtcaagaagggctat
gtggggattcacagttcaggattcagagacttcctgttgaaaccagagcttctccgagcc
attgtggattcgggatttgaacatccatcagaagtgcaacacgagtgtatcccccaagct
atcttaggaatggatgtcatctgtcaagcgaaatctgggatggggaaaactgctgtcttt
gttctatcgactcttcagcagattgaacccgttgctggtcaagttgctgctctcattctt
tgtcacacaagagaacttgcttaccagatctgtcatgaatttgagaggttcagtacctat
ttgcctgacatcagggttgctgtcttctatggtggtgtcagtgttaagattcacaaggat
atgctaaaaaacgaatgccctcatattgtcgttggaacacctggaagaatattggctctc
ggaagggataaagatcttggattaaagaatgtgcggcattttgttcttgatgagtgtgat
aagatgctagaatcacttgacatgcggagggatgtgcaggagatcttcaagatgactcct
catgacaagcaagtaatgatgttttccgcaactctcagtaaagagatccgtcctgtttgc
aaaaaatttatgcaagagccgatggaaatttatgttgatgatgagaccaagttgactctt
catggtcttgtacagcactatattttattgaaggagggagagaaaaaccgtaaattgaat
gatcttcttgatgcattagacttcaatcaagttgtcatttttgtcaaaagtgtcagtaga
gcagctgagctgaacaagttacttgaggagtgtaactttccctctatctgcatccattca
ggaatggctcaggaggaaaggttgaagcgttacaagaatttcaaggaggggcaatcaaga
attcttgtggcaacagatttagtaggaaggggtatcgatattgagcgtgttaacattgtt
atcaactatgacatgccagattctgctgatacatacctgcacagggtgggcagggctggt
aggtttgggaccaaggggcttgcaattacatttgtttcatctgcagctgactctgatgtt
cttaatcaggttcagtcaaggtttgaggtggacataaaggagcttcctgagcaaattgat
acttcaacttacatgccatcatga
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