Alnus glutinosa (common alder): 133863078
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Entry
133863078 CDS
T10577
Name
(RefSeq) protein RDM16 isoform X1
KO
K12843
U4/U6 small nuclear ribonucleoprotein PRP3
Organism
aglu Alnus glutinosa (common alder)
Pathway
aglu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133863078
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aglu03041
]
133863078
Spliceosome [BR:
aglu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
133863078
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GFIT
Motif
Pfam:
PRP3
Prp3_C
DUF726
Motif
Other DBs
NCBI-GeneID:
133863078
NCBI-ProteinID:
XP_062155046
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Position
3:complement(33654568..33660233)
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AA seq
869 aa
AA seq
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MDRPSSKRTRDDRDHRDRDHKHRSSKDDKHRDSSDHHHRHRSRREGSRDRESKRERSYDD
EREREGSRERERPKHREVKREPSDDDREDRHREKSYDRDGEAERRHSSHSHKRKERGESE
ERGDGGEKRARGLERRRFEDGKEANGEERKEKKKERRRFEDRVKEEEEEKKDRGLEGGKR
VNLSEVKVKVNVKEEVSDDEHFDDAQSAGTANASDSVGNGAALESLTMESRRVPETSAPG
HPFPTKVSSISTTNENKGVSITRSHEVPGKSSTDGSSSAAGKSGSLSSLDALAKAKKALQ
MQKELSEKLKKIPLLNKGVSSSSDGTRHLGLKEGLKAPSIAAGTGSTAPTAVSAGATSSS
LTLPTSSTGPSASAGLTAIPNIEAVKRAQELAARMGFRQDPEFAPLINLFPGQMAADVSV
PQKPSKAPVLRLDALGREIDEHGNVVNVTKPSNLSTLKVNINKQKKDAFQILKPELDVDP
ESNPHFDGSMGINKTKLLRPKRMTFQFVEEGKWSKEAEHIKLKSQFGEAQAKEQKAKQAQ
LAKAKAAPDINPNLIEVAERVITKEKPKDPIPEIEWWDLLLLQSGTYGDITDGSVAEAKL
KMEKITIYLEHPRPIEPPAEPAPPPPQPLKLTKKEQKKLRTQRRLAREKDKQEMIRQGLI
EPPKPKVKMSNLMKVLGSEATQDPTRLEKEIRSAAAEREQAHIDRNVARKLTPAERREKK
ERKLFDEQNGLETIVSVYRINDLSHPQTRFKVDVNAQENRLSGCAVISDGITVVVVEGGN
KPIKRYGKLMLKRINWASAVKEEDEDEDGSNDKPANKCVLVWQGSVAKPSFHRFTVHECL
TEAAARKTFTDAGVAHYWDLAVDFSDDQI
NT seq
2610 nt
NT seq
+upstream
nt +downstream
nt
atggaccgcccctcaagcaagcgtactagagacgaccgcgaccaccgcgatcgagaccac
aagcaccgatcctctaaagatgacaagcaccgagactcatccgatcaccaccaccgtcac
cgatctcggcgcgagggcagccgagaccgagaatcgaagcgcgagcggtcgtacgatgac
gagagggagagggaggggagcagagagagggagaggcccaagcatcgcgaggtgaagcgt
gagccgtcggatgacgatcgcgaggatcgtcatcgcgagaaatcgtacgatagggacgga
gaggcggagaggcggcactcctcgcactcgcacaagaggaaggagagaggagagagtgag
gagagaggtgacggtggcgagaagagggctaggggtttggagagaaggcgttttgaggat
gggaaggaagcgaatggggaagagaggaaggagaagaagaaggagaggaggaggttcgag
gatagagtgaaagaagaagaggaggagaaaaaggataggggtttggaaggtgggaagaga
gtgaatttgagtgaggttaaggttaaggttaacgtcaaggaagaggtgagtgatgatgag
catttcgatgatgcccagagcgccggcaccgccaatgcgagtgattcagttgggaatggt
gctgctctggaatcactcaccatggaatccaggagagtgcctgagacctctgcccctggt
catcccttccctacaaaggtatcttcaatttctaccacaaatgaaaataagggagttagt
attaccagatctcatgaggttcctggaaaatctagtacagatgggtcgtcttcagctgct
ggaaaaagtggaagtctatcatcacttgatgctttagctaaagctaagaaagctttacaa
atgcaaaaggaattgtcagagaagctgaagaagattcccctgttgaacaagggtgttagc
tcaagttcagatggtacccggcacttgggattgaaggagggactgaaagcaccatctatt
gctgctggaacagggtccactgcccctacagctgtctcggcaggggcaacatcaagttca
ttaaccttacccacatcttccacgggtcctagtgcttctgctggcctcacagctataccc
aatattgaggcagtaaaacgtgcacaggaacttgcggccaggatggggtttcgtcaggac
ccagagtttgctcctcttataaacttgtttccaggtcagatggcagcagatgtttctgtt
ccgcagaagccaagcaaggcccctgttcttcgccttgatgcacttggtagggagatagat
gagcatggaaatgtggtgaatgtgactaaaccaagcaacctaagcactctaaaggtcaat
attaacaaacagaaaaaggatgcatttcagattcttaaacctgaattggatgttgatcca
gagtcaaatcctcattttgatggaagtatgggtattaacaaaactaagcttttgagacct
aagaggatgactttccagtttgttgaagaaggcaagtggtcaaaagaggctgagcatatt
aaattgaagagtcaatttggagaagcacaagcgaaagagcaaaaggcaaaacaggcacag
ttggctaaggcaaaggcagcacctgatattaatccaaatttgatagaggtagcggagaga
gttatcaccaaagagaaacctaaagacccaattcctgaaattgagtggtgggatctgctt
cttttgcaatctggtacttatggtgacattactgatggatctgtggctgaagctaaacta
aagatggagaagatcactatctatttagaacatcctcgcccaattgagcctcctgccgag
ccagcccctccacctcctcagcctctgaagctaaccaagaaggagcagaagaaactccgt
actcaacgtcgtctagcgagggaaaaagataagcaggagatgattagacaaggcctgatt
gagcctccgaagccaaaagttaaaatgagcaatctgatgaaagttcttggctctgaagca
acccaagatccaactaggcttgaaaaggaaatcaggagtgcagctgctgaacgtgagcaa
gctcacatagacagaaatgttgctcggaaactcactcctgctgagcgccgtgaaaagaaa
gaacggaagctttttgatgagcaaaatggactggagaccattgtgtcggtttaccggatc
aatgacctgtcacacccacagacccgcttcaaagttgatgttaatgcccaagagaaccgc
ttgtctggatgtgctgtgatttctgatggcattactgttgtggttgttgaaggtggaaac
aagcccataaagaggtatggaaagcttatgcttaagcgtataaactgggcctctgctgta
aaggaggaagatgaagatgaggatggcagtaatgataaacctgctaataagtgtgtctta
gtatggcaaggaagtgttgccaaaccgagtttccatagatttactgttcatgagtgcctg
actgaagctgctgctcggaaaacatttactgatgctggtgttgctcattactgggatctt
gccgttgacttttcggatgatcaaatataa
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