Alnus glutinosa (common alder): 133865258
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Entry
133865258 CDS
T10577
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
aglu Alnus glutinosa (common alder)
Pathway
aglu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133865258
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aglu03019
]
133865258
03012 Translation factors [BR:
aglu03012
]
133865258
Enzymes [BR:
aglu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
133865258
Messenger RNA biogenesis [BR:
aglu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
133865258
Translation factors [BR:
aglu03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
133865258
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
T2SSE
nSTAND3
AAA_19
AAA_16
ATPase
NPHP3_N
ABC_tran
Myosin_head
Motif
Other DBs
NCBI-GeneID:
133865258
NCBI-ProteinID:
XP_062157615
LinkDB
All DBs
Position
4:complement(26229599..26266658)
Genome browser
AA seq
1201 aa
AA seq
DB search
MPYSAIFQGYIRTTTTPLLSMSLRPTATTYFRAPKSLRPSLLPFFTRNRPPRFGNSHVRP
YSRPRVMCSAVEVDRRVRQRRVAMPFWNQQSSGYGRFAYQDVSSDESDSELGPAQQQSQC
ASTLDNIDGWRWKLTMLLRNKDEQEVASRERKDRRDFEQLSALASRMGLHSHQYAKVVVF
SKVPLPNYRPDLDDKRPQREVILPLGLQREVDAHLKAYHSQKSMRVGSFSDNSLSRSSSA
GSVATDEGLYEQQEPLKQISVAMQRILQQRSLQLRNKQQDWQESPEGQKMLELRRSLPAF
KARDALLKAISENQVIVVSGETGCGKTTQLPQYILESEIEAARGAVCSIICTQPRRISAM
SVSERVAAERGEKLGESVGYKVRLEGVKGRDTRLLFCTTGILLRRLLLDRSLKGVTHVIV
DEIHERGMNEDFLLIVLKDLLPRRPELRLILMSATLNAGLFSSYFGGAPTMHIPGFTYPV
RAHFLENIIEMTGYRLTTYNQIDDYGQEKGWKMQKQAQALRKRKSQIASAVENALEDADF
KEYSLRTRESLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAH
PLLGDPSRVLLLACHGSMASSEQRLIFDKPQDGVRKIVLATNMAETSITINDVVYVVDCG
KAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRCVYDAFADYQLPE
LLRTPLQSLCLQIKSLQLGSISQFLSRALQPPEPLSVQNAVEYLNIIGALDENENLTVLG
RNLSVLPVEPKLGKMLIFGAIFNCLDPIMTVVAGLSARDPFLMPFDKKDLAESAKAQFSA
RDCSDHLALVRAYEGWKDAERHQSGYEYCWRNFLSAQTLKAIDSLRKQFFCLLKDSGLVD
QNTENCNRWSHDEHLVRAVICAGLYPGICSVVNKEKSIALKTMEDGQVLLYSNSVNAGVP
KIPYPWLVFNEKVKVNSVFLRDSTGVSDSVLLLFGGNISRGGLDGHLKMLGGYLEFFMKP
ALADMYLSLKRGLEELMQKKLLDPKLDVQSENELLSALRLLVSEDQCHGRFVFNRQVPAP
SKKTTKEPLPGNLLSGGGGDNSKNQLQSLLARAGHEAPTYKTRQLRNNLFRSTVIFNGLN
FDGQPCNNKKIAEKDAAAEALLWLKGESHSTATDIDHMSMLLKKSKKKDRKRSSTRSAKW
G
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
atgccctactcagccattttccagggctatatcagaaccaccacaacccctttactttcc
atgtctctcagacccaccgccacaacctacttcagagcccccaaatccctaagaccttca
cttttacctttctttacgaggaatcgaccgccgaggtttgggaactcgcacgtgcggccc
tactcgaggccacgggtcatgtgctcggcggtcgaggtggaccggagggtgaggcagagg
agggtcgctatgccgttttggaaccagcagagctcgggctacggccggtttgcgtaccag
gacgtctcgagcgacgagtcggacagcgagttgggcccggctcagcagcaatcgcagtgt
gcttcaacccttgataacattgatgggtggagatggaagttaacaatgcttcttcgcaac
aaagacgagcaagaagtggcatcgagggagagaaaagatagacgtgattttgagcaactc
tcagcgctggcaagcagaatgggtttacatagccatcaatatgcaaaagttgtcgtcttt
agtaaagtccctctgccaaattacagaccggacttggatgataagcgtccacagagagag
gtgattttacctttaggattgcaaagagaagtagatgctcatctcaaggcttatcattct
caaaaatctatgcgggttggaagtttctcagataattccttgtcaagatcaagcagtgct
ggaagtgttgctactgatgaggggctttacgagcagcaggagcccttgaaacagattagt
gttgctatgcagagaatcctccaacagagaagtttgcaattgcgaaataagcaacaggat
tggcaggaatctcctgaaggtcaaaagatgcttgaacttcgtagaagtctccctgcattc
aaagcgagagatgcattattaaaagctatttctgaaaatcaggtcattgttgtctcaggt
gaaactggctgtggtaaaaccacacaacttcctcaatacatcttggaatctgaaattgaa
gctgctcgtggagctgtctgtagtattatatgtactcaacctagacgaatatctgccatg
tctgtttctgaaagagttgctgcagaacgaggggagaaacttggagaatctgttggttac
aaagttcggcttgagggagtgaaaggaagggacactcgccttcttttttgcaccactggc
atattgttgaggagattacttttggatagaagtttgaaaggggtaactcacgttattgtt
gatgagattcacgaacgtggaatgaatgaagattttcttcttattgtcctcaaagatctc
cttcctcgtagaccagagttgaggttaattttgatgagtgcaaccctcaatgcggggctc
ttctcttcctactttggtggtgctccaacaatgcatatccctggttttacatatccagta
cgtgcacattttctggagaatattattgaaatgacaggatatcggttgactacatataat
caaattgatgattatggtcaagaaaaggggtggaaaatgcagaaacaagctcaagcttta
aggaagaggaagagccagattgcttctgctgttgagaatgcacttgaagatgctgacttt
aaggagtatagcttacggactcgggagtctttatcctgttggaatccggactcaattggt
tttaacctcattgagcatgtgctctgccacatagtcaagaaagaaaggcctggtgctgtt
ttggtttttatgactggttgggatgacataaattcgttgaaggaccagctccaagctcat
cctctcttgggtgatccgagcagggtgttgctgcttgcatgccatggttccatggccagc
tctgagcagaggttaatttttgataagcctcaagatggagtgaggaaaatagttctagct
acaaacatggctgagactagtattactatcaatgatgtcgtttatgtggttgattgcgga
aaggcaaaagagacatcatatgatgcactaaacaacactccttgtttgttaccatcctgg
atatcaaaggctgctgctcggcaaaggaggggaagagctggtcgggttcagcctggtgag
tgttaccatctctatcccagatgtgtatacgatgcttttgctgattatcaactgccagaa
ctcctaaggacaccattacagtcgttatgtttacaaatcaaaagtttacaacttggaagt
atttcacaattcttatctagggcattgcagccgccggaacctctatcggttcaaaatgct
gtggaatacttgaacatcattggggctttggacgagaatgaaaatctgactgtgctagga
cgcaacttgtcagtgcttccagttgagccaaaacttggaaaaatgctcatatttggggct
attttcaactgcctagatccaataatgaccgttgttgctggccttagtgccagagatccc
ttcctgatgccattcgacaagaaggatcttgctgagtcagcaaaagcacaattctctgcc
cgtgactgcagtgaccatcttgcacttgtccgagcttatgagggttggaaagatgctgaa
agacatcaatctggttatgagtactgttggagaaatttcctttctgctcaaactctgaaa
gccattgactctcttcggaagcagttcttttgtttgcttaaggatagtggtctagttgat
cagaacaccgaaaactgcaatagatggagccatgatgagcatcttgtccgagcagtcatc
tgtgcaggcttgtaccccggaatatgctctgttgtgaataaagagaagtcgatagcatta
aaaacaatggaggatggccaagtacttctgtactcaaattctgtgaatgctggagtaccc
aaaattccatatccgtggctagttttcaatgaaaaggtgaaagttaattcagtatttctt
cgggattcaactggtgtatctgattctgtgctgctcttatttggagggaacatttcgagg
ggtggtctagatggacacctgaaaatgctgggaggatacttggaatttttcatgaaacct
gctttagcagatatgtatttaagcttaaagagaggacttgaggaacttatgcagaagaaa
cttttggatcctaagttggatgtacaatcagagaatgagctcctgtcggctttaagatta
ctggtctcagaggaccaatgtcatggtagatttgtcttcaatcgccaagtgccagcaccc
tcaaagaagactacaaaagagccactaccaggcaacctcttgagtggtggaggtggtgat
aattcaaagaatcaactacagtcattacttgccagggcaggacatgaagcacccacctac
aagacaagacagctgagaaacaacctgttccgttccactgtgatctttaatgggttgaat
tttgacgggcaaccttgcaacaataagaaaattgcagaaaaggatgcagctgctgaggct
ctgctgtggttgaagggtgagagccattcaactgccacagatattgaccatatgtctatg
cttctaaagaagagcaaaaagaaagatcggaaaagatcctcaacccgcagtgctaagtgg
ggttaa
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