Alnus glutinosa (common alder): 133865335
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Entry
133865335 CDS
T10577
Name
(RefSeq) cleavage stimulation factor subunit 77
KO
K14408
cleavage stimulation factor subunit 3
Organism
aglu Alnus glutinosa (common alder)
Pathway
aglu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
133865335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aglu03019
]
133865335
Messenger RNA biogenesis [BR:
aglu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
133865335
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
HAT_Syf1_CNRKL1_C
TPR_19
TPR_2
TPR_15
TPR_16
TPR_9
TPR_CcmH_CycH
Motif
Other DBs
NCBI-GeneID:
133865335
NCBI-ProteinID:
XP_062157711
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Position
4:6872590..6897401
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AA seq
767 aa
AA seq
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MGDDKAVDDKYNVEAAEIIANEAQRLPITEAAAVYEQLLALFPTAAKYWKQYVEAHMAVS
NDEATKQIFSRCLLNCLQIPLWRCYIRFIRKVNEKKGVEGQEETRKAFDFMLSYIGADIA
SGPVWMEYIAFLKSLPAQNTQEESQRMTAVRKVYQKAILNPTHHIEQLWKDYENFENSVS
RQLAKGLLSEYQPKYNSARAVYRERKKYVDEIDWNMVAVPPSGSYKEEMQWMAWKRLLAF
EKGNPQRIDSASSNKRIIFTYEQCLMYMYHYPDIWYDYATWHAKSGSVDAAVKVFQRALK
ALPDSEMLRYAYAEVEESRGAIQSAKKIYESLLGDGVNATTLAHIQFIRFLRRTEGVEAA
RKYFLDARKSPNCTYHVYVAYAMMAFCLDKNREIANSVFEAGLKRFMHEPVYILEYADFL
TLLNDDRNIRALFERALSSLPPEESVEVWKRFTHFEQTYGDLASMLKVEQRRKEALSRTG
EEGASALEGSLQDVVSRYSFMDLWPCSSKDLDHLARQEWLVKNINKKVEKLALPNGPGST
DKVSTGLISNSNVSAKVVYPDTSKMTIYDPRQKSGMENLPSATASGVPAAFSNLSNPIVA
TVGDGTTNAFDEILKATPPALVAFLASLPAVEGPTPDVDVVLSICLQSDIPAGQTGKSGT
YPVQLSGGPAPSTSDLSGSSKAHPIPSASSFKPTRDRQSGKRKDLDGQENDETATVQSQP
LPRDAFRIRQIQKARVTTVSKARGATSQTGSASYGSALSGDFSGSTG
NT seq
2304 nt
NT seq
+upstream
nt +downstream
nt
atgggcgacgataaagccgtggacgataaatacaacgttgaagcggcagaaattatagcc
aacgaggcgcagcgtttgcctattacggaggctgcggcggtatacgagcaacttctggcg
ctgtttccaacagccgcaaaatattggaagcagtatgttgaggcacacatggctgttagt
aatgatgaagccaccaaacagatatttagccgttgtttattaaactgtcttcaaattcct
ctctggcggtgctacattcgtttcatcagaaaggtcaatgagaagaagggtgtagagggt
caagaagagactagaaaagcttttgattttatgctcagctacattggagctgacatcgca
tctgggcctgtctggatggaatacatcgccttcttaaagtcattgccggctcaaaacact
caggaagagtcacaaaggatgactgctgttaggaaagtataccaaaaagctattcttaat
cctactcatcacattgaacaactttggaaggactatgagaactttgaaaattctgttagc
cgtcaactggcaaaagggctgttatcagagtatcaaccgaaatataacagtgccagggct
gtctacagagagcggaagaaatatgttgatgaaattgattggaatatggttgctgtacca
ccatctggctcttacaaggaagaaatgcaatggatggcatggaaacggttgttagctttc
gagaaaggaaacccacaaaggatagacagtgcatcctccaacaagcgaattatattcaca
tatgaacagtgtctgatgtatatgtaccattatcctgatatatggtatgactatgctaca
tggcatgcaaaaagtggttcagttgatgctgcagtcaaagtatttcagcgagctttgaag
gctcttcctgactcagaaatgctaaggtatgcatatgcggaggtggaggaatctcgtgga
gcaattcagtctgcaaagaaaatatatgagagcctgttaggggatggtgttaacgcaaca
acacttgcgcatatacaatttattcgctttttaaggaggactgagggtgttgaagcagct
cgcaagtactttttagatgctcgaaaatccccaaactgcacgtaccatgtttatgtggct
tatgcaatgatggccttttgtcttgacaagaatcgagagattgcaaatagtgtttttgaa
gcgggattgaaacggtttatgcatgagcctgtatacattcttgaatatgcagactttttg
acactcttgaatgatgatagaaatatccgggccttatttgagcgggcactgagttcactg
ccaccagaagaatctgttgaggtctggaaacgattcacccattttgagcaaacttacgga
gatctggctagcatgttgaaggttgaacaaagaaggaaagaagccctttctagaacaggg
gaagagggagcatcagctttagagggatcattgcaagatgttgtatcacgttatagtttc
atggatctttggccttgctcttctaaggatttggatcatttggcacggcaagagtggctt
gttaaaaatatcaataagaaagtggagaagttggctctgcctaatggccctgggtctaca
gataaggtttctacaggcttgataagcaattcaaacgtatctgcaaaggttgtttatcct
gatacttctaagatgacgatttatgacccaaggcaaaaatccgggatggaaaatcttcca
agtgctacagcgtctggagttcctgctgcatttagcaacttatcaaatccaattgttgca
acagtgggtgatggaacaaccaatgcgtttgatgaaatactgaaagcaacaccacctgca
ttggtagcatttttagcaagcttgcctgctgttgagggtccaacaccagatgtggatgtt
gtattatcaatttgcttgcagagtgatataccagcagggcagactggcaaatcagggact
tacccagtgcaactgtcaggaggtcctgctcctagtacgagtgacctctctggttcaagc
aaggcccatcccatcccaagtgcttcgtctttcaaaccaaccagggacagacaatctggg
aaaaggaaagatctagacgggcaagaaaatgatgaaactgcgaccgtccaaagccagcca
ctacctagagatgctttcaggatacgacagatccagaaagctcgagtaactactgtttca
aaagctagaggtgccacttcacaaactggatcggcttcatatggaagtgctctttccgga
gatttttctggtagcactggctga
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