Alnus glutinosa (common alder): 133865841
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Entry
133865841 CDS
T10577
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
aglu Alnus glutinosa (common alder)
Pathway
aglu03018
RNA degradation
Brite
Enzymes [BR:
aglu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
133865841
Messenger RNA biogenesis [BR:
aglu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
133865841
Spliceosome [BR:
aglu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
133865841
Complex C
U4/U6.U5 tri-SnRNP related factors
133865841
Ribosome biogenesis [BR:
aglu03009
]
Eukaryotic type
Pre-60S particles
Helicases
133865841
Transfer RNA biogenesis [BR:
aglu03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
133865841
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
nSTAND3
Motif
Other DBs
NCBI-GeneID:
133865841
NCBI-ProteinID:
XP_062158317
LinkDB
All DBs
Position
4:31116485..31129220
Genome browser
AA seq
1030 aa
AA seq
DB search
MEDSPTLGKRKEPESEQSKVSQTPGQGSAPKRRREPEDSEVSETQNQECVANQQREPGDS
KVIGTLNQASLNNLMRTCVHEVAVPSGYTSTKDESINGTLSNPVYNGKMAKTYPFKLDPF
QRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELS
QEFNDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERG
VVWEESIIFLPPEIKMVFLSATMSNATEFAEWICNLHKQPCHVVYTDFRPTPLQHYVFPM
GGNGLYLVVDENEQFKEENFVKLQDTFSKQKFSDVNKSANGKASGRIAKVGNASGGSDIF
KIVKMIMERKFQPVIIFSFSRRECEQHAMSMSKLDFNNQEEKDNVEEVFRNAILCLSEED
RDLPAIELMLPLLQRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKT
VVFTAVKKWDGDSHRFIGSGEYIQMSGRAGRRGKDERGICIIMVDEQMEMNTLKDMVLGK
PAPLVSTFRLSYYSILNLMSRAEGQFTAEHVIRNSFHQFQYEKALPDIGNKVTKLEQEAV
MLDASGEAQVAEFHKLKLDIAQLEKKMMAEITRPEWVLYHLRPGRLVRIREGGTDWGWGV
VVNVMKKPSPGVGALPSRGGGYIVDTLLHCSPGSSESSSRPKPCPPHPGEKGEMHVVPVQ
LPLISALSKLMISIPSDLRPLEARQSILLAIEELKTRFPQGLPKLNPVKDMGIKDPEIVE
LVNQIEELERKLHAHTLHKSQDVHQMKCFQRKAEVNHEIQQLKSKMRDSQLQKFRDELKN
RSRVLKRLGHIDADSVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQIAALASCFI
PGDKSSEQIQLRTELARPLQQLQESARKIAEIQYECKLDINVDEYVESTVRPFLMDVIYS
WSKGASFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAHAVGEVDLENKFAAASESLRR
GIMFANSLYL
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atggaagattcccctacacttgggaaacgaaaagaacctgaatctgaacagtctaaggtc
tcccaaacccctggtcaaggatctgcaccgaaacgacgaagagaacctgaagattcagag
gtctctgaaacccaaaatcaggaatgtgttgcaaatcaacaaagagaacctggagattca
aaggtcatcggaacccttaatcaagcatctctcaacaatctgatgcgcacatgtgtgcat
gaggttgcggttccaagtgggtacacctcgaccaaggatgaatctattaatggaaccctc
tctaatcctgtgtataatggaaagatggcaaaaacatacccttttaagctcgacccgttt
cagcgggtatccgtggcatgcctagaacggaatgagtctgtgttggtctcagctcatact
tcggcaggaaaaactgcagttgccgagtatgcgatagcaatggcttttagagataagcaa
agggttatatatacttccccattgaaagctttgagcaatcagaagtacagagagcttagt
caggagtttaatgatgtgggattgatgacgggtgacgttactctgtcacctaatgctagt
tgtttggtcatgacgaccgaaattcttcggggaatgctttataggggttcagaggttttg
aaggaagtcgcatgggtcatctttgatgaaatccattatatgaaggatcgtgaaagaggg
gttgtttgggaagagagtattatatttttgccaccagagattaaaatggtatttctgtca
gcgacaatgtcaaatgccactgagtttgctgagtggatttgtaatttgcacaaacagcca
tgtcatgtggtctacacggatttccgaccaactcctctgcagcattatgtttttcccatg
ggtgggaatggattgtatcttgtggtcgatgagaatgagcagttcaaggaggagaatttt
gtgaagttacaggatacattctcaaagcagaaattcagtgatgttaacaagagcgctaat
ggcaaagcaagtgggagaatagcaaaagtcgggaatgcttctggtggttctgacatattc
aaaattgtgaagatgattatggaacggaaattccaaccagtaatcatcttcagcttcagt
agaagagaatgtgaacaacatgcaatgtccatgtccaagcttgatttcaataaccaagag
gaaaaggataacgtagaagaggttttccgtaatgcaatactctgcttgagtgaggaagac
agagatttaccggctattgagttgatgttgccactacttcagcgaggtattgctgttcat
cattctggccttcttcctgttatcaaggaattggtagagcttcttttccaggaaggcctt
gtaaaggctctttttgccacagaaacatttgccatgggtttaaatatgcccgcaaaaact
gttgttttcacagctgtcaagaagtgggatggtgatagtcatcgttttattggatctggt
gaatatatacagatgagtggaagggctgggcgccgtggcaaagatgagcgtggtatttgt
attataatggttgatgagcagatggagatgaatacactcaaggacatggttttgggtaaa
cctgctccattagttagtacattcaggctgagctactactcaattttgaatttaatgagt
cgcgctgaaggccagtttactgctgaacatgtaataaggaattcattccatcaatttcag
tatgagaaggccttacctgatatagggaacaaggttacgaagctggagcaggaagctgtg
atgcttgatgcttcaggagaggctcaagttgctgaatttcataagctaaaactagatata
gcccaacttgagaagaagatgatggctgaaataacaaggcctgaatgggttctttaccat
cttcgtcctggtcggctggtcaggataagggaaggtggaacagattggggatggggagtt
gtggttaatgttatgaaaaaaccctccccaggggtaggcgcattgccgtcacgtgggggt
ggttatatagttgatactttacttcattgctcacccggttcaagtgagagtagttcacgg
ccaaaaccatgcccacctcatcctggagaaaagggtgaaatgcatgtggtccctgttcag
ttgcccctaatttctgctctaagcaaactgatgatatctattccttctgatcttcggcca
ttggaagcgaggcaaagtatattgcttgccatagaggagctgaaaactcgttttccacaa
ggccttccaaagcttaaccctgtaaaggacatgggcattaaagatccggaaattgttgag
ttggtgaaccaaattgaggaacttgaacggaagttacatgctcatacacttcataagtcc
caagatgttcatcagatgaaatgtttccaaaggaaagcagaggtgaaccatgaaattcaa
caacttaagtcgaaaatgcgtgattcccagcttcaaaaattccgggatgaacttaagaat
cgttcacgagtcttgaaaaggcttggtcatatcgatgctgacagcgttgtccagttaaag
ggacgggccgcctgcttgatagacacaggcgatgagctcctcgtcactgagctgatgttt
aatggtacattcaatgatcttgatcatcaccaaattgcagctcttgcaagttgctttata
ccaggagacaaatccagcgagcagatacaattgcgaacagagcttgccagaccattacaa
caactccaagaaagtgcaagaaaaattgcggagattcaatatgaatgcaaattggatata
aatgtggatgagtatgtggaatcaacagtaaggccgttcttgatggacgtaatttattct
tggtcaaagggagcaagttttgcagaggttatacaaatgaccgatatctttgagggtagt
attattagaagtgctagaaggcttgacgagtttttgaatcagttgcgtgctgctgctcat
gccgtaggagaagttgatttagaaaacaagtttgcagcagctagcgaaagccttcggcga
ggtataatgtttgccaattccctgtatctatga
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integrated database retrieval system
