Alnus glutinosa (common alder): 133865957
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Entry
133865957 CDS
T10577
Name
(RefSeq) DNA mismatch repair protein MSH2-like
KO
K08735
DNA mismatch repair protein MSH2
Organism
aglu Alnus glutinosa (common alder)
Pathway
aglu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
133865957
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aglu03400
]
133865957
DNA repair and recombination proteins [BR:
aglu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
133865957
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
Motif
Other DBs
NCBI-GeneID:
133865957
NCBI-ProteinID:
XP_062158477
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All DBs
Position
4:21309001..21335503
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AA seq
942 aa
AA seq
DB search
MEENFEEQNKLPELKLDAKQAQGFLSFFKSIPHDPRAVRFFDRRDYYTAHGENATFIAKT
YYHTTTSLRQLGSGSDALSSVTISKNMFETIARDLLLERTDHTLELYEGSGSNWRLVKSG
TPGNLGSFEDVLFANNEMQDSPVVVALSPNFRENGCTVGLAYIDLTKRVLGLAEFLDDSQ
FTNVESALVALGCKECLLPVESAKSSESRSLHDALTRCGVMLTERKKTEFKARDLVEDLG
RLVKGSKEPVRDLISVFEFAPGALGALLSYAELLVDESNYGNYTICRYNLDSYMRLDFAA
MRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVKEINSRLDLVQAF
VEDAALRQDLRQHLKRISDVERLMHNLEKKRAGLQHIVKLYQSSIRLPYIKSALEHYEGH
FSSLIKDRYLDPLECWTDDDHLNKFIGLVEASVDLDQLENGEYMISSSYDPALSALKDEQ
ESLERQIHNLHKQTANELDLPLDKALKLDRGTQFGHVFRITKKEEPKIRKKLTTQFIVLE
TRKDGVKFTNTKLKKLGDQYQKKLEEYKNCQKELVDRVVQTAATFSEVFGSLAGLLSELD
VLLSFADLASSCPTPYTRPDITPSDEGDIILEGSRHPCVEAQDWVNFIPNDCKLVRGKSW
FQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDKASISVRDCIFARVGAGDCQLRGVS
TFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHLVEVIKAPTLFATH
FHELTALTHENPDHEPHKKQNVGVANYHVSAHIDSSSRKLTMLYKVEPGACDQSFGIHVA
EFANFPESVVALAREKAAELEDFSPTAIISNDAQEEVGSKRKRECDPDEMSRGAARAHQF
LKEFSDLPLEEMDLKQALQQVNKLKEELQKDAVNCRWLQQFF
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atggaagagaattttgaggagcagaacaagcttcctgagctgaaactggatgctaagcag
gctcaagggtttctctcattcttcaagtcgataccccatgacccaagggctgtacggttc
tttgatcgcagggactactatactgctcatggtgaaaatgcaacctttattgcaaagacc
tactatcatactactacttctttgcgacaattgggtagcggatctgatgccctttcaagt
gtaactattagcaaaaacatgttcgaaacaattgcccgtgatctactcttggagagaaca
gaccatactcttgagctctatgagggtagtggttcaaattggagactggtgaaaagtgga
actcctggaaatcttggcagttttgaagatgttttgtttgccaacaatgagatgcaggat
tccccggttgttgttgcactatcacccaacttccgtgaaaatgggtgcactgttggatta
gcttacattgatctaactaagagagtacttgggttggctgaatttcttgacgatagccaa
tttacaaatgtggagtcagctttagttgctcttggttgtaaggaatgccttctgcctgtc
gagagtgctaaatccagtgaaagtagatccttgcatgatgctttgactagatgtggtgtg
atgttaactgagagaaagaaaactgagttcaaagcaagggacttagtggaggatcttggt
aggcttgttaaaggttctaaagaaccggttagagacttaatttctgtatttgaatttgca
cctggtgccttgggggcattactgtcttatgctgaattacttgtagatgagagcaattat
gggaactatacgatctgcaggtacaatctcgacagctatatgaggttagattttgctgct
atgagggcactgaatgtcctggaaagcaagacggatgccaacaaaaatttcagtttgttt
ggtctcatgaatagaacttgtactgctggtatgggaaaacggttattgcacatgtggctg
aagcagcctttattagatgtaaaggaaatcaactccaggttggatttggtacaagcattt
gtggaggatgctgcacttcgtcaagatctgaggcagcacctgaaaagaatatcagacgtt
gagcgactgatgcacaatcttgagaagaaaagagccggtttgcagcatattgtaaaactt
tatcagtcaagtataagacttccctacattaaaagtgccctggaacattatgagggacat
ttttcctccctgatcaaggacaggtatttggatcccctagagtgctggactgatgatgat
cacctgaataagttcattggccttgtagaagcttctgttgaccttgatcaacttgagaat
ggggaatacatgatttcttccagttatgatcctgcactctctgcgctgaaagatgaacaa
gagtcactggagcgccaaatacacaatttacataaacaaactgctaatgaacttgatctg
cccctagataaggcattaaagttagataggggcacacagtttggacatgtttttagaatt
acaaagaaagaggagccaaaaataaggaaaaagctcactactcaatttatcgtccttgaa
acccgaaaggatggagttaaatttacgaatacaaagcttaaaaagttaggtgaccagtat
caaaagaaacttgaggagtataagaattgtcagaaagagctggtcgaccgtgtagttcaa
actgcagcaacattctctgaggttttcggttctttagctggattgctttctgagttggat
gtcttacttagttttgctgatttggcttctagctgtcctactccttacacaagaccagac
atcaccccctcggatgaaggagatattatcttagaagggagcagacatccttgtgtggag
gctcaagactgggtgaattttataccaaatgattgtaaacttgtcagggggaaaagttgg
ttccaaatcatcactgggcctaacatgggtggaaaatccacatttattcggcaggtcggt
gtgaatattctgatggcacaagttggttcttttgttccatgtgacaaagctagcatttct
gtacgtgattgcatttttgctcgtgtgggtgctggtgactgccaattacgtggagtttct
acctttatgcaagaaatgcttgaaactgcatcaatattgaaaggagctacagataagtca
ttgataatcattgacgagttgggccgcgggacatcaacttatgatggatttggtttagct
tgggccatctgtgagcatcttgttgaagtgatcaaagcacccactttatttgcgacccac
tttcatgaactgactgcattaactcatgaaaatcctgatcatgagccccataagaagcaa
aatgttggtgtggcaaactaccatgttagtgcacacattgactcatcaagtcgcaaattg
actatgctttataaggttgagccaggggcttgtgatcaaagttttggcatccatgttgca
gaatttgcaaactttcctgaaagcgttgttgcccttgctagagaaaaggctgctgaattg
gaagatttctcacctactgcaatcatttccaatgatgctcaagaagaggtaggatccaaa
cgaaagagagagtgtgatcctgatgagatgtctagaggtgctgcccgggctcaccagttt
ctgaaggagttctctgatctcccgttagaggaaatggatttgaagcaggctctgcaacaa
gtaaacaaattgaaggaggaattgcagaaggatgcagtaaactgtcgctggctccagcaa
ttcttctag
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