KEGG   Alnus glutinosa (common alder): 133867233
Entry
133867233         CDS       T10577                                 
Name
(RefSeq) uncharacterized protein LOC133867233
  KO
K12828  splicing factor 3B subunit 1
Organism
aglu  Alnus glutinosa (common alder)
Pathway
aglu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:aglu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    133867233
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:aglu03041]
    133867233
   03036 Chromosome and associated proteins [BR:aglu03036]
    133867233
Spliceosome [BR:aglu03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    133867233
 Complex B
    133867233
 Complex C
   U2 SnRNP specific factors
    133867233
Chromosome and associated proteins [BR:aglu03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    133867233
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT HEAT_ECM29 Htt_N-HEAT_1 HEAT_EF3_N HEAT_2 Cnd1 XMAP215_CLASP_TOG Vac14_Fab1_bd Adaptin_N
Other DBs
NCBI-GeneID: 133867233
NCBI-ProteinID: XP_062159935
LinkDB
Position
4:766031..770076
AA seq 1267 aa
MDPEIAKTQEERRRMEQQLASLTSVTFDTDLYGGNDRDAYVTSIPVNEDDENIDTMDNEV
ARKLASYTAPKSLLKEMPRGGADDDHDDLLGFKKPQRIIDREDDYRKRRLNRVISPERHD
AFAAGEKTPDPSVRTYADVMREEALKREKEETLKRIAKKKEEEEAAAKETKAAEDKAPKR
RNRWDQSQDDGAAKKAKTTSDWDLPEETTPGRWDATPTPGRLGDATPSASVGRRNRWDET
PTPGRLADATPAGGATPGATPAGMTWDATPKLSGLATPTPKRQRSRWDETPATMGSATPM
EGATPSAAAAASFTPGITPVGGVDLATPTPGAINLRGSITPEQYNLLRWEKDIEERNRPL
TDDELDSMFPQEGYKILEPPASYVPIRTPARKLLATPTPLGTPLYSIPEENRGQQFDVPK
EVPGGLPFMKPEDYQYFGALLNEDDEEELSAEEQKERKIMKLLLKVKNGTPPQRKTALRQ
LTDKAREFGAGPLFNRILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPYVHKILVVI
EPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASA
LGIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLLDEN
QKVRTITALSLAALAEAAAPYGIESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPLMD
ALYASYYTKEVMVILIREFQSPDEEMKKIVLKVVKQCVSTEGVEADYIRNDVLPEFFRNF
WVRRMALDRRNYRQLVETTVEMANKVGVADIVGRIVEDLKDESEPYRRMVMETIEKVVAN
LGSSDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQRVKPYLPQICGTIK
WRLNNKSAKVRQQAADLISRIAVVMKQCQEEQLMGHLGVVLYEYLGEEYPEVLGSILGAL
KAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMR
ICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIA
IVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDAL
MDRDLVHRQTAASAVKHMALGVAGLGCEDALIHLLNYVWPNIFETSPHVINAVMEAIEGM
RVALGAAVVLNYCLQGLFHPARKVREVYWKIYNSLYIGAQDALVAAYPVLEDEHSNVYSR
PELMMFV
NT seq 3804 nt   +upstreamnt  +downstreamnt
atggacccggagatcgcgaagacccaggaagagcggaggcgcatggagcagcaactggct
tccttgacctccgtcaccttcgacaccgacctatacggcggcaacgaccgcgacgcctac
gtcacgtccatccccgtcaacgaggatgacgagaacatcgataccatggacaacgaggtc
gcccgcaagctcgcctcctacaccgcccccaagtccctcctcaaggaaatgccccgggga
ggagccgatgacgaccacgacgaccttctggggttcaagaagccccagcgcatcatcgac
cgcgaggacgactaccgtaaaaggaggctcaaccgcgtgatctctcccgagaggcacgac
gccttcgccgccggggagaagactccggacccctcggtcagaacctacgccgacgtcatg
agggaggaggcgctcaagagggagaaggaggagactctcaagaggatcgccaagaagaag
gaggaagaggaggccgccgccaaggagactaaggctgctgaggataaggctcccaagaga
aggaatcgctgggaccagtcccaggacgatggggctgccaagaaggccaagacgacgtcg
gattgggacttgccggaggagacaaccccggggcggtgggatgcgactccaactcctggg
agattgggcgatgcaacaccatctgcgtctgtgggaaggaggaatcgctgggacgagacc
ccaacgcctgggagattggcagatgccaccccggccggtggggctactccgggcgccacc
ccagctgggatgacgtgggatgccacgccaaagctttcaggcctcgccacgcccactcca
aagcgacagaggtcaaggtgggacgagacgcccgccaccatgggcagcgcgaccccaatg
gagggggcaacgccttcagctgcggccgcggcgtcgttcacacctgggattacccctgtg
ggcggagtcgatctggcgacaccaacgccgggggcaatcaatctgcgtggctccatcacc
ccagagcagtacaatttgcttaggtgggagaaggatatcgaggagaggaaccggcctttg
accgacgacgagctggactccatgtttccgcaagagggttataagattttggagcctcca
gcatcctatgtgcctattaggactccagcgaggaagctgctcgcgacgcccactccactg
gggacgccgctgtattcaattcccgaagagaatcgcggccaacagtttgacgtgcctaag
gaagtgcctggtggcttgccgttcatgaagcctgaggactaccagtactttggtgcgttg
ttgaatgaggatgatgaggaggagttatccgctgaagagcagaaggagcggaagatcatg
aagctgttgcttaaggtcaagaatgggacgccaccgcagaggaaaacggcgctgcggcag
cttactgataaggcaagagagtttggggccggccccttgtttaaccggattctgccgttg
cttatgcaacccactttggaggaccaagagaggcatctcttggtgaaggtaattgatagg
gtgctttataagttggatgagttggtacgcccgtatgtgcataagattcttgttgtgatt
gagcccttgttgattgatgaggattactatgcgcgtgttgaagggcgagagattatttcc
aatcttagtaaagctgctggcttggccaccatgattgctgctatgcgaccggatattgat
aacattgatgaatatgtcaggaacacaaccgctagagctttcagtgttgttgcttctgct
cttgggattcctgctctcttgcccttcttgaaggccgtgtgtcagagtaagaaatcatgg
caagctcggcacactgggattaagattgttcagcagattgctatcttgatcggttgtgct
gtgcttcctcatctgaggtctcttgtagagatcatagaacatggtctgctggatgagaat
cagaaggtgaggacaatcaccgcattgtctctggctgctcttgctgaggctgctgccccc
tatggtattgagagctttgactcagtgttgaagcctttgtggaagggtatcaggtcacac
cgtgggaaagtcttggctgcattcttgaaggctatcggctttatcatcccgcttatggat
gcgctatatgctagttactatactaaggaagttatggttattttgattcgtgagtttcag
tcacccgatgaggaaatgaagaagattgttctgaaggtcgtgaagcagtgtgtgagtacg
gagggtgtggaggctgattacattcgcaatgatgttcttcctgagttctttagaaacttc
tgggtcaggaggatggctttggataggagaaactataggcaacttgtggagacaacggtg
gagatggcaaacaaagttggtgttgccgatatagtagggagaattgttgaggatcttaaa
gatgagagtgagccttacaggcgtatggtcatggaaaccattgagaaggtagttgctaac
ttgggttcatctgatattgatgctcggttggaggagcttcttattgatggaatcctttat
gccttccaagagcagaccagtgatgatgccaatgtaatgcttaatgggtttggtgcggtt
gtgaattcacttgggcagagagtgaaaccgtacctaccccagatttgtggtaccataaaa
tggagattgaataacaagagcgcaaaggtgagacagcaagcagctgatctcatatcaagg
attgctgttgtcatgaagcagtgccaggaggaacaactgatgggtcaccttggtgttgtc
ttgtatgagtatctgggagaagagtatccagaggttttgggatcgattctgggagctctt
aaggcaattgtcaatgttattggtatgacaaagatgactcctcctataaaggatttgctt
cctaggttgacaccaatcctgaagaataggcatgagaaagtccaggagaactgcattgac
cttgttggacgaattgctgaccgtggggctgagtttgttccagcaagggagtggatgagg
atttgcttcgagcttcttgagatgcttaaagcccacaagaaaggaattcggcgagctacg
gtgaacacctttgggtatattgccaaagccattggaccacaagatgtcctggctaccttg
ttgaataatctcaaggtgcaggagcggcagaaccgtgtctgcacaactgtggccattgct
atagttgcagaaacctgttctccctttacggttctgccagcgttgatgaatgagtatcgt
gtgccagagcttaatgtgcagaatggtgtcttgaaatccctctcttttctgttcgagtat
atcggtgaaatgggaaaagactacatctatgctgtgaccccattgcttgaggatgccctc
atggatagggatttggttcacaggcagactgctgcttctgctgttaagcacatggccttg
ggggttgctggtttgggttgtgaggatgctttaatccacttgctcaactacgtgtggcca
aacatttttgagacttctccgcatgtgataaatgctgtcatggaagcgattgaaggaatg
agggtggccttaggtgctgctgttgtgctaaactactgtcttcaggggctcttccatcct
gctcgtaaggttagggaggtctactggaagatttataactcactgtatattggagcacaa
gatgctcttgtggcggcatatcctgtgctggaagatgagcatagcaatgtatacagtagg
cctgagttaatgatgtttgtctga

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