Alnus glutinosa (common alder): 133867613
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Entry
133867613 CDS
T10577
Name
(RefSeq) vacuolar sorting protein 3 isoform X1
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
aglu Alnus glutinosa (common alder)
Pathway
aglu04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
133867613
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
aglu04131
]
133867613
Membrane trafficking [BR:
aglu04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
133867613
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-Vps39_C
Clathrin
CNH
Vps39_1
Motif
Other DBs
NCBI-GeneID:
133867613
NCBI-ProteinID:
XP_062160348
LinkDB
All DBs
Position
5:complement(15931429..16002494)
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AA seq
1022 aa
AA seq
DB search
MAKPEPRARTVLEPLAQVDLSNHSRSPTRSLAIWTVSDSQTLTYVGTQSGTLILLSTNPN
NPTTTTTSETASKSTSFSPQNVSLLRSVSFDVDSPVDRILVLADIGKVLVLSDGALFLVD
SLLLQPVKRLSFFKGVSVITMRFRSSNQAESTNLLESNANSNASSSDYASTSQRLLQRLG
GGIRANGLRVKESEQHHRSEGNFVFAVVIGKRLILVELVLGNRVNKSDEDVDGVNGSFVV
LKEIQCIDGVMTMVWLDDSIIVGTVNGYSLFSCVTGQSGIIFTLPDMSSPPQLKLMWREW
KVLLLVDNVGVLVNSHGQPVGGSLVFRHGSPDSIGEIYSYVVVVKDGNLELYHKKSGRCL
QTVTIGGEGVGPCVVADEEVGGGKLLAVAAPNKVIFYRNLSSEEQIKDLLRKKNFKEAIT
LVEELECDGEMSEDMLSFVHAQVGFLLLFDLHFEEAVNHFLQSETMQPSEVFPFIMRDPN
RWSLLVPRNRYWGLHPPPKPLEDVVDDGLLAIQRATFLRKAGVETLIDDDFLSNPPSRAD
LLESAIQNITRYLEVCRQKELTLSVREGVDTLLMYLYRALNCISDMEKLASSTNSCIVEE
LETLLDDSGHLRTLAFLYASKGMSSKALAIWRILARNYSTGLWKDPALENCLQDSSNNSI
SSKEIAATEASKILEESSDQDLVLQHLGWIADVNQVLAVQVLTSEKRAIQFSPDEVIAAI
DPRKVEIFQRYIQWLIEDQDCDDTQFHTLYALSLAKSAIEAFEADNAYQNADIGRLGKAE
ISYNRMNLIFESPVRERLQIFLQSSDLFDPEEILDLIEGSELWLEKAILYRKLGQEALVL
QILALKLEDSEAAEQYCAEIGRPDAYMQLLDMYLDPQDGKEPMFKAAVRLLHNHGESLDP
LQVLEKLSPDMPLQLASETILRMFRARLHHHRQGQIVRNLSLAVDVDASLARLEERSRHI
QINDESLCDSCHARLGTKLFAMYPDDSIVCYKCFRRQGESTSVTGRNFKEDVLIKPGWLV
TG
NT seq
3069 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcccgagcccagggctcgaaccgtcctcgaaccactggctcaggtcgacctt
tccaaccactcccggagcccgacccgatctctcgccatctggaccgtctccgattcccag
acccttacttacgtcggaactcaatccggaaccctaattctactctccacaaaccctaac
aatccaaccaccacgacgacctccgaaactgcttccaaaagcacttcgttttcgccgcaa
aacgtttcgcttctgcgaagcgtttcgttcgacgttgattctccggtggatcggatactt
gtgcttgctgacattgggaaggttctggtactttcggatggggctttgttcttggttgat
tcccttttgttacaacccgtgaagaggttgagtttcttcaagggagtctccgtaattacg
atgcgatttcggagtagtaatcaagcggagagtacaaatttgttggagagtaatgccaac
agtaatgcttcttcttcggactatgctagcacgagtcaacggcttttgcaacgattgggt
ggtgggattagagcaaatggtttgagagtcaaagaatctgaacagcatcaccggagcgaa
ggtaatttcgtttttgcagttgtgattggtaaaagattgatactggtagagcttgtttta
ggtaatagagtaaataaaagtgatgaagatgtcgatggcgtaaatgggtcttttgtagtt
ttgaaagagattcagtgtattgatggggttatgacaatggtgtggcttgatgattccata
attgtgggtacggttaatggctatagcttgttttcgtgtgttacgggacagagtggtatc
atatttacattgccagatatgtctagcccgccgcagcttaaattgatgtggagagagtgg
aaggtgcttttattggtagacaatgtgggtgttcttgttaattcgcatgggcagccagtt
ggtgggagcttggtgttcaggcatggcagcccggattctattggggagatatattcctat
gtggttgttgtgaaggatgggaacttggagttgtatcataagaaatcgggtcgttgtctt
caaacagttactattggcggggaaggggttggaccttgcgttgttgcagatgaggaagta
gggggtgggaaacttttggctgttgcagcacccaacaaggttattttctatcgaaattta
tcttctgaagaacaaatcaaagacttgttgagaaagaagaactttaaggaagccatcacc
ttggttgaggagcttgagtgtgatggtgaaatgtcagaggatatgctctcctttgttcat
gctcaagtggggtttctattgctttttgacctccattttgaggaagcagtaaatcacttt
ttgcagtctgagacaatgcagccttctgaagtgtttccattcataatgcgagatccaaat
cgctggtcactgctggttcctagaaaccggtattggggtctgcatccaccccctaaacct
cttgaagatgttgtagatgatgggttgctggctatccaaagagctaccttcctgagaaaa
gcaggtgtagaaactttaatagatgacgattttctctcaaatccaccaagtagagctgat
ttattggagtcagcaatccagaacattaccaggtacttggaagtttgccggcagaaagag
ttaacattgtcagtgagagagggagttgacacactattaatgtacctttatagagctcta
aattgtattagtgatatggagaagctggcatcttcaacaaacagctgtattgtggaggag
ttggaaactttattagatgactctgggcacttacggacacttgcctttctctatgcaagt
aaagggatgagctcaaaggctcttgctatttggcgtatcttggcaaggaattattcaact
ggcctctggaaagaccctgccctggagaattgcttacaggattccagtaacaatagtatc
tccagtaaggaaattgctgcaactgaggcgtcaaaaattcttgaggagtcatctgatcag
gatctggttctacaacatcttggatggattgcagatgtcaaccaggtgcttgctgttcaa
gttttaacatctgaaaagagagccattcagttctctccagatgaagttattgccgcaatt
gatccaagaaaggtagaaatttttcaaaggtacattcagtggttgattgaagatcaggac
tgcgatgatactcagttccatacattatatgctctatcacttgccaaatcagccattgaa
gcctttgaagcagacaatgcttatcaaaacgctgacattggaaggttaggcaaggcagaa
atttcttataatagaatgaacttgatctttgaaagtcctgttcgagaaaggctgcagata
tttttacagtcttcggacttgtttgatccagaagagattcttgacttgattgaaggatca
gagttatggttggaaaaggcgattctttacagaaaactggggcaggaggcgttggtactc
caaattttggccttgaaactggaagatagtgaagctgctgaacagtattgtgcagagatt
ggcagaccagatgcctatatgcagttacttgatatgtatttggatccacaagatggcaag
gagccaatgtttaaggctgctgttcgccttctacacaatcatggagaatctctggaccct
ttgcaagttttggagaaattgtccccagatatgcccctccaactggcctccgagacaata
ttaagaatgttcagagctcgccttcatcatcatcgtcaagggcagatagtgcgcaatcta
tcccttgctgtggacgttgatgcaagtctagcaagattggaggaaagatcaagacatatt
cagatcaatgatgagagcctttgtgattcttgtcatgcccgccttggaactaagctgttt
gcaatgtacccagatgattctattgtttgttacaagtgttttcgtcgccagggtgagtcc
acttctgtcacaggtcgcaacttcaaagaagatgttctaatcaaaccaggttggcttgtg
actggatga
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