Alnus glutinosa (common alder): 133868031
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Entry
133868031 CDS
T10577
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
aglu Alnus glutinosa (common alder)
Pathway
aglu03020
RNA polymerase
aglu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
133868031
09124 Replication and repair
03420 Nucleotide excision repair
133868031
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aglu03021
]
133868031
03400 DNA repair and recombination proteins [BR:
aglu03400
]
133868031
Enzymes [BR:
aglu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
133868031
Transcription machinery [BR:
aglu03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
133868031
DNA repair and recombination proteins [BR:
aglu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
133868031
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
MRNIP
Motif
Other DBs
NCBI-GeneID:
133868031
NCBI-ProteinID:
XP_062160811
LinkDB
All DBs
Position
5:complement(7981164..7990139)
Genome browser
AA seq
1195 aa
AA seq
DB search
MEDDQEYDQQMSYDDDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVD
ESADIEIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNL
TYSAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYENSEKDLTEL
GECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVGEVRSMAESQNRPPS
TMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDT
QMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGE
FCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDV
RGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYA
STLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGS
AAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTLRKLRRRVDV
NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVDKQKLLIKKKDIHALQQRETPEDGGWHDL
VAKGFIEYIDTEEEETTMISMTINDLVQARVNPEEAYSETYTHCEIHPSLILGVCASIIP
FPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQL
PAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP
DRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPMPQEEAQGLASRYSRRDHSI
SLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDM
PWTMEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL
HKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPA
EGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAVANLKKNSF
ECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTQEPKEPKPSKDQKKKGA
NT seq
3588 nt
NT seq
+upstream
nt +downstream
nt
atggaagacgaccaagagtacgaccagcagatgagctacgacgacgacgaagaggaagag
atcacccaggaggacgcctgggccgtgatctcggcctacttcgaagagaagggcctggtg
cgccagcagctcgactccttcgacgaattcatccagaacactatgcaggagattgtcgac
gagtccgccgacatcgagatccgccccgagtcacagcacaacccgggccaccagtcggac
ttcgctgagactatatataagattagctttggtcagatatacttgagcaagcctatgatg
actgagtctgatggagaaactgcgaccttgtttccaaaggctgcaaggttgagaaattta
acatactcggcccccttgtatgtggatgtctcaaaaagagtcataaagaaagggcatgat
ggtgaagaagtaaccgagactcaggatttcaccaaagtttttattgggaaggttccaata
atgctccggtcaagttattgcacattgtacgagaattcagagaaggatttaacagagctt
ggggagtgtccatatgatcaaggtgggtattttattataaacgggagtgaaaaggttcta
atcgctcaggagaagatgagcaccaatcatgtctatgtgttcaagaaaagacaacctaac
aagtacgcttatgtgggggaagttcgttctatggcggagtctcaaaacagaccccccagt
accatgtttgtgcggatgctctctcggaccagtgccaaagggggctcttcagggcagtac
attcgtgcgactcttccatacattcgaactgagattccaattattattgtatttcgggct
ttggggtttgtagctgacaaagacatactagagcacatatgttacgacttctctgatacc
caaatgatggagttgctccgcccctccttggaagaagcatttgtgattcaaaatcaacag
gttgcactagactacattgggaaacgaggagcaactgttggtgtaactagggaaaagagg
atcaagtatgctaaagaaattcttcaaaaggaaatgcttcctcatgttggtgttggagag
ttttgtgagacaaaaaaggcttactatttcggttatattattcaccggcttctgctttgt
gcacttggccggagagcagaagatgatagggatcattatggcaacaagaggctggacctt
gctggtcccttacttggaggcctttttagaatgctattcagaaagttaactagggatgtg
agaggttatgtgcaaaagtgtgtagataatggaaaggatgttaacctccaatttgccatc
aaagcaaaaaccatcaccagtggtctcaaatactctcttgccactggaaactgggggcaa
gcaaatgcagctggtacaagagctggagtttcacaggtgttgaatcgcttaacatatgcc
tccacattgtcacatctgagaagactgaattctcccataggacgtgaagggaaattggcc
aaaccacggcagttgcacaattcacagtggggaatgatgtgtccagctgaaacacctgaa
ggacaagcatgtggactggtaaagaatcttgcattgatggtgtacattactgttggatct
gcagcataccctattttggaatttttggaagaatggggtacagagaattttgaggaaatt
tctcctgcggttattccacaagctacaaaaatttttgttaatggttgctgggttggtatt
catcgagatcctgatatgttggtgaaaacattaagaaagcttagacgaagggttgatgtt
aatactgaggttggagtcgttagagatatccgattgaaagaactgcggatatatactgat
tatggccgttgcagtcgtccactattcattgtggacaagcagaagcttctcataaagaag
aaggatattcatgcattgcagcagagggaaacccctgaggatggtggttggcatgatctt
gttgcaaagggatttatagaatatattgatacagaagaagaagagaccacaatgatttcc
atgaccatcaatgatcttgtacaagcaagggtcaatccagaggaagcttattctgaaact
tatacccattgtgaaatccacccatcattgattttgggtgtttgtgcttcaattatacca
tttccagaccataatcagtctcctcgtaatacatatcaatcagctatgggtaagcaagcc
atgggtatttatgtcaccaactaccaatttcgaatggatacattagcttatgttctgtat
tatcctcaaaagccacttgttactacgcgagccatggagcatctccactttaggcagctt
cctgctggcattaatgccattgttgccattgcctgctattctggttataaccaggaagat
tctgtcataatgaaccaatcatctatagaccgtggattctttaggtcactatttttccgt
tcatatcgagatgaggagaagaagatggggactcttgtcaaagaggatttcggacggcca
gacagatccaataccatgggtatgcgccatggctcttatgataaattggatgatgatggc
cttgcgcctcctggtactagagtttctggtgaggatgtgatcattggaaagaccactccc
atgcctcaggaggaagctcagggactagcttcacgttattcacggcgtgatcatagcata
agcctgcgccatagtgaaactggaattgttgatcaagttctactgacaacaaatgctgat
gggctaaggtttgtgaaagtaagggtgagatccgttagaattcctcagattggggataaa
tttagcagtcggcatgggcaaaagggaacagtgggcatgacatatactcaagaagacatg
ccgtggaccatggaagggatcacccctgatatcatcgttaatccacatgctattccttca
cgtatgacaattggtcagctgattgagtgtatcatgggcaaggttgcagctcacatggga
aaggaaggagatgctactcctttcacagatgtcactgtggacaatatcagcaaagctctt
cacaaatgtggttatcaaatgcgtggttttgagacgatgtataatggtcacactggtcga
cgtctcagtgctatgatattccttggccccacttactaccaaagactgaagcatatggtt
gatgacaagatccattcacgtgggcgcggccctgtccagatcctgacaaggcagcctgct
gaaggacggtcccgtgatggaggtcttcgatttggagaaatggaacgagattgcatgatt
gcccatggtgcagctcacttcctcaaagagagattgtttgaccagagcgatgcatatcgg
gtccatgtttgtgaacgttgtgggttgatagccgttgcaaatttgaagaagaattctttt
gagtgcaggggttgcaaaaacaaaaccgacattgttcaggttcacattccttacgcctgt
aagctgctcttccaagagcttatggccatggctatagcaccaagaatgctcacacaggaa
cccaaggaacccaaaccatccaaagaccaaaagaagaaaggagcctga
DBGET
integrated database retrieval system
