Alnus glutinosa (common alder): 133868201
Help
Entry
133868201 CDS
T10577
Name
(RefSeq) uncharacterized protein LOC133868201
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
aglu Alnus glutinosa (common alder)
Pathway
aglu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133868201
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aglu03019
]
133868201
03041 Spliceosome [BR:
aglu03041
]
133868201
Messenger RNA biogenesis [BR:
aglu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
133868201
Spliceosome [BR:
aglu03041
]
Complex B
Other components
Prp19-related factors
133868201
Complex C
133868201
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_15
DUF5955
Motif
Other DBs
NCBI-GeneID:
133868201
NCBI-ProteinID:
XP_062161002
LinkDB
All DBs
Position
5:6394616..6401809
Genome browser
AA seq
919 aa
AA seq
DB search
MSIERDLYPSQDDLLYEEEVLRNPFSLKLWWRYLIARSEAPFRKRFVLYERAVKALPGSY
KLWHAYLRERLELVRNLPISHSQYETLNNTFERALVTMHKMPRIWFMYLQTLTHQKLVTR
TRRTFDRALCALPVTQHDRIWEPYLLFVSQKGVPIETSLRVYRRYLKYDPTHIEDFIEFL
LNSSLWQEASERLASVLNDDSFFSIKGKTKHRLWLELCDLLTRHATEVSGLNVDAIIRGG
IRKFTDEVGRLWTSLAEYYIRRNLHEKARDIFEEGIMTVVTVRDFSVIFDSYSQFEESML
AHKMENVSSSDEEDEGEEENGVEDDEDVRLDIDLSVAKLEKKMLNGFWLHDDKDIDLRIA
RLEYLINRRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTKQILTYTEAVRTVDPMKAVG
KPHTLWINFSKLYESHKDIANARVIFDKAVQVNYKTVDHLATLYCEWAEMELRHKNFKGA
LDLMRRATAEPSVEVKRRVAADGNEPVQMKLYKSLRLWTFYVDLEESLGNLESTRAVYER
ILDLRIATPQIILNYAFLLEEHRYFEDAFKVYERGVKIFKYPHVKDVWVTYLSKFVKRYG
KTKLERARELFEHAVETAPADAVKPLYLQYAKLEEDYGLAKRAMMVYDKATKAVPNNEKL
SMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKTMCLKYAELEKSLGEIDRARGVY
VFASQFADPRSDGDFWNKWHEFEVQHGNEDTFREMLRIKRSVSASYSQTHFILPEYLMQK
DQRLDLDDARDKLKQAGVAEDEMAALERQLAPTATTAKDSSRKVGFVSAGIESQTDGGTK
ATANHEEIELPEESDSDEDEKVEIAQKDVPDAVFGGLVRKRDDEAEKDGEEHNAAATKDR
DGESRLGALERIKRQKKGA
NT seq
2760 nt
NT seq
+upstream
nt +downstream
nt
atgtctatcgagagggatctctacccctcacaggacgacctcctctacgaagaggaggta
ctccgcaacccgtttagcctcaagctctggtggcgctacctaatcgcacgctccgaagcc
cctttccggaagcgatttgtcctctacgagagagccgtcaaggccctccctggaagctac
aagctgtggcacgcctatctccgcgagcgcctcgagctcgtacgcaacctccccatctcc
cactcccagtatgaaaccctaaacaacaccttcgagcgagcccttgtcaccatgcacaag
atgccccgcatttggttcatgtacctccaaaccctaacccaccagaagctcgtcacccgg
actcgccgcaccttcgaccgggccctctgcgcgttaccggtgacccagcacgatcggatt
tgggaaccctacctcctgttcgtcagccaaaagggtgtcccgatcgagacctcgcttagg
gtttatcgcaggtacttgaaatacgaccctactcatatagaagatttcattgaatttttg
cttaattcgagtctttggcaagaggcttcagagcgattagcttcggtgttgaatgatgat
tcttttttttcgataaaggggaagactaaacataggttgtggttggagttgtgtgatttg
ctcactaggcatgccaccgaggtctctggtttgaatgtggatgcgataattagaggtggg
attaggaagttcacggacgaggttgggcggctgtggacctcccttgccgagtattatatt
aggaggaatttgcatgaaaaggcaagggatatattcgaggagggtatcatgactgtggtc
actgtgagggactttagtgtgatttttgattcatattcgcagtttgaggagagcatgctt
gctcacaagatggagaacgtgagctcgagtgacgaggaggatgaaggagaggaagaaaat
ggtgttgaagatgatgaagatgttcggttggatattgatttatcggtggccaagcttgag
aagaagatgcttaacgggttttggttacacgacgataaggatatagatttgaggattgct
cgattagagtatctcattaatagaaggcccgaattggctaacagtgttctgttacgacaa
aatcctcataatgtggagcagtggcatagaagggtgaagttgtttgagggtaaccccaca
aagcagatcttgacttacactgaggcggtgaggacggttgatcctatgaaagccgtgggg
aagcctcacacattgtggattaatttttccaagctgtatgagagccacaaggatattgcc
aatgccagagttatatttgataaggctgtgcaagtgaactacaagactgttgatcatctg
gctactttgtattgtgagtgggctgaaatggaactgaggcataagaatttcaaaggagca
ctggatttgatgaggcgggccacagcagagccatcagtggaggtcaaacgaagagtggct
gctgatgggaatgaaccagttcagatgaagctctataagtccttgagactttggaccttc
tatgttgatttagaagagagcctgggtaacttggaatccactcgagcagtttatgagcgg
atattggatctaagaatagccacaccgcaaattattctcaattatgcatttctgctggaa
gaacatagatacttcgaagatgcattcaaagtatatgaaagaggtgtcaagatttttaag
tatccacatgtcaaagacgtatgggttacatacctctcaaaatttgtaaagagatatgga
aagacaaaactagagcgggcaagagagctgtttgagcatgctgttgaaacggcgcctgct
gatgcagtaaaaccattgtatcttcaatatgcaaagctggaggaggattatggtctggca
aagcgagctatgatggtctatgataaagcaactaaggctgttccaaacaacgagaaattg
agcatgtatgaaatttacattgctcgagcggcagagatttttggtgtcccgaaaacaagg
gaaatatatgagcaagcgatagagtctggtcttccagacaaagatgtcaagaccatgtgc
ttgaaatatgccgagcttgagaagagcttgggagaaattgatcgtgctcgtggagtatat
gtatttgcatctcaatttgcagatccacgatctgacggggacttctggaataaatggcac
gagtttgaggtgcagcatggaaatgaagataccttccgagaaatgcttcgtattaaaaga
agtgtttctgcaagctatagtcagacacatttcatcctgcctgaatatctgatgcaaaag
gatcagagattggaccttgatgatgcaagagacaaattgaaacaagctggggttgctgaa
gatgaaatggctgctctcgaaaggcagttagctcccacagccaccactgctaaagatagc
agcagaaaagtgggctttgtgagtgccggtattgaatcacagactgatggaggtacaaaa
gcaaccgcaaatcatgaagaaattgagctaccagaagaaagcgattcggatgaggacgag
aaagttgaaatcgcacaaaaagatgttccagatgcggttttcggaggtttggttcgtaag
agagatgatgaggctgaaaaagatggggaagagcacaatgctgcagctactaaagatagg
gatggtgagagccgcctaggcgccctggagagaataaagaggcaaaagaaaggagcctga
DBGET
integrated database retrieval system
