KEGG   Alnus glutinosa (common alder): 133868223
Entry
133868223         CDS       T10577                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH12-like
  KO
K12854  pre-mRNA-splicing helicase BRR2 [EC:5.6.2.6]
Organism
aglu  Alnus glutinosa (common alder)
Pathway
aglu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:aglu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    133868223
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:aglu03041]
    133868223
Enzymes [BR:aglu01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     133868223
Spliceosome [BR:aglu03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    133868223
 Complex C
   U5 SnRNP specific factors
    133868223
SSDB
Motif
Pfam: Sec63 DEAD SNRNP200_wHTH Helicase_PWI ResIII Helicase_C BRR2_plug AAA_22 AAA_30 DUF1127
Other DBs
NCBI-GeneID: 133868223
NCBI-ProteinID: XP_062161026
LinkDB
Position
5:complement(6622933..6631130)
AA seq 2178 aa
MAHLGGGAEAHARHKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPKSFGDRAF
RGKPPELDEKLQKAKRKKKERDPLAEPQPGRQSKRRRLQEESVLTSSEEGVYQPKTKETR
AAYEAMLSVIQQQLGGQPLSIVSGAADEILAVLKNETFKNPDKKKEIEKLLNPIPNPVFD
QLVSIGRLITDFQDGGDAAGPAAANGDDALDDDVGVAVEFEENEEDDEESDLDMVQEDEE
EDDDVVEANGAGGMQMGGGIDDDDDMREANESMSLNALSIGAYWLQGKISEAFEKQIDPQ
QCQKLAEEVLNILAEGDDREVESKLLVLLQFDKFNLIKFLLRNRLKIVWCTRLARAEDDE
QKKKIEEEMLGLGPELEAIVDQLHATRASAKERQKNLEKSIREEARRLKDESGGDGDRGR
IGLVDRDADSGWGQRQLLDLDSIAFEQGGRLVAAKKIELPDGSYRHSSKGYEEIHVPALK
PKPFDPSEKLIKISDMPDWAQPAFKGMKELNRVQSRVYETALFKADNILLCAPTGAGKTN
VAVLTILQQIALNRNSDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQYYDVKVRELSG
DQSLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESI
VARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVDLEKGLYHFDNSYRPVPLSQQYIG
ITVKKPLQRFQLMNDVCYEKVMGVAGKHQILIFVHSRKETAKTARAIRDTALANDTLGRF
LKEDSASREILHTHTDLVKSNELKDLLPYGFAIHHAGLARADRQLVEELFGDGHVQVLVS
TATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQYDSYGEGIIIT
GHSELQYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAREASNWIGYTYLYVRMLR
NPTLYGLAPDVLTRDITLEERRADLIHSAATILDKNNLVKYDRKSGYFQVTDLGRIASYY
YITHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPIKES
LEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLMRALFEIVLKRGWAQLAEKA
LNLCKMVNRRMWSVQTPLRQFNGIQNDLLMKLEKKDLAWERYYDLSSQEIGELIRIPKMG
RLLHKFVHQFPKLNLAAHVQPITRTVLRVELTITPDFQWEDKVHGYVEPFWVIVEDNDGE
YILHHEYFMLKQQYIDEDHTLSFTVPIYEPLPPQYFIRVVSDRWLGSQTVLPVSFRHLIL
PEKYPPPTELLDLQPLPVTALRNPSYEALYKDFKHFNPVQTQVFTVLYNTDDNVLVAAPT
GSGKTICAEFAILRNHQKGPESVMRVVYIAPLEALAKERYRDWERKFGKGGLKMRVVELT
GETATDLKLLEKGQIIISTPEKWDALSRRWKQRKHVQQVSLFIIDELHLIGGRGGPILEV
IVSRMRYIASQVEDKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQG
VDIANFEARMQAMTKPTYTAIVQHTKNGKPALVFVPTRKHVRLTAVDLMTYSVVEGGGKK
PFLLKTPEEIEPFIDKINDEMLKATLREGVGYLHEGLTNLDQEVVSQLFEAGWIQVCVMS
SSMCWGLSLSAHLVVVMGTQYYDGRENSHTDYPVTDLLQMMGHASRPLLDNSGKCVILCH
APRKEYYKKFLYEAFPVESHLHHFLHDNLNAEVVAGIIENKQNAVDYLTWTFMYRRLTQN
PNYYNLQGVSHRHLSDHLSELVENTLSDLEASKCVGIEDDMDLSPSNLGLIASYYYISYT
TIERFSSSLTSKTKMKGLLEILASASEYAQIPIRPGEEEAVRRLINHQRFSFENPKCTDP
HVKANALLQAHFARQTLGGNLSSDQREVLLSATRLLQAMVDVISSNGWLNLALLAMEVCQ
MVTQGMWERDSMLLQLPHFTKELAKRCQENPGKSVETVFDLVEMEDDERRELLQMSDEQL
LDIARFCNRFPNIDMTYEVLDSDKARAGRDMMLQVTLERDLEGRTEVGPVDAPRYPKAKE
EGWWLVVGDTKTNQLLAIKRVSLQRKSKVKLEFTPADAGKKTYTLYFMCDSYLGCDQEYT
FTIDVKKAAGPDEDSGEE
NT seq 6537 nt   +upstreamnt  +downstreamnt
atggcgcatctaggcggtggtgcggaagcgcacgccagacacaagcagtacgagtatcga
gccaactcgagtttggtcctgaccaccgactctcgaccacgagacacccacgaacccacc
ggggagcccgagtctctttggggcaagatcgatcccaagagcttcggcgatagggccttc
cgtgggaaaccccctgaactggacgagaagcttcagaaagccaagaggaagaagaaggaa
cgtgacccgcttgccgaaccccaacctggccgccagagcaagcggcgccgccttcaagaa
gagagcgtattgacttcatccgaggaaggtgtataccagccgaagacgaaggagacgaga
gctgcgtatgaggctatgctgagtgtcattcaacagcagttgggtggtcagcctctcagt
attgttagtggtgccgccgatgagatcttggctgtccttaagaatgagacatttaagaac
cctgacaagaagaaggagattgagaagcttctgaatccgattcccaacccagtttttgat
cagttggtttcaatcgggaggcttatcacggactttcaagatgggggtgatgcagctgga
cctgctgctgccaatggtgatgatgctcttgacgacgatgtgggtgtggcagtcgagttt
gaggagaatgaggaggatgatgaggagagtgatcttgatatggtccaggaggatgaagag
gaggacgatgatgtggttgaagccaatggtgctgggggtatgcaaatggggggtgggatt
gatgatgacgatgatatgcgagaagcaaatgagagtatgagccttaatgctctgagcatt
ggtgcttattggcttcaggggaagatctctgaagcatttgaaaagcagattgatccgcaa
cagtgccagaagcttgcagaagaggtccttaatatacttgctgaaggtgatgacagggaa
gttgagtcaaagctgttggtgcttctccaatttgataagtttaaccttattaagtttctg
ttgaggaatcgattgaagattgtgtggtgtacccggttggcaagggctgaagacgatgaa
cagaagaagaagatcgaggaggagatgctgggtttgggtccagaattggaggcaattgtt
gatcagttgcatgccacaagggctagtgcaaaagaaaggcaaaagaacttggagaagagt
attcgagaagaggctcgccggttgaaggatgagagcggtggagatggggacagaggtagg
atagggcttgttgatagggatgcagacagtggttggggccagcggcagttgcttgatctt
gacagtattgcttttgaacaaggtggtcgtttggtggcggcaaaaaagattgagcttcct
gatgggtcttacaggcattctagcaagggatatgaagaaattcatgtgcccgcattgaag
ccaaaaccatttgatccaagtgagaaacttataaaaatatctgacatgccagactgggca
cagccagctttcaaaggaatgaaggagttgaacagggtacagagtagagtctatgagact
gccctttttaaagctgacaacatcctcttatgtgctcccactggtgcagggaaaactaat
gttgcagtgctcaccatacttcagcaaatagcattgaacaggaattcggatggttcattc
aaccacagtaattataagattgtatatgttgcgcctatgaaagctcttgtcgctgaagtg
gtcggcaatttgtccaatcgattgcagtattatgatgtcaaggtcagggagcttagtgga
gaccagtcacttactcgtcaacaaattgaagaaactcaaattattgtcacaactcccgag
aagtgggatatcattaccaggaagtcaggtgatcgaacttatacacagcttgtgaagctt
cttatcattgatgagattcatctccttcacgataacagaggacctgtgcttgaaagtatt
gtcgctagaactgttaggcagattgaaactacaaaagagcatattcggttggttgggttg
tctgctacactccctaactatgaagatgtggctttgttcttacgggttgatctggaaaaa
ggattataccactttgacaatagttacagacctgtacctctttcccaacagtatattgga
attacagtaaagaagccactgcagaggttccagttgatgaatgatgtctgttatgaaaag
gtaatgggtgtagcaggaaaacatcaaatccttatttttgtccactcgaggaaagaaaca
gccaaaacagctcgtgccatacgagatactgctcttgctaacgatactcttggtagattt
ttgaaagaggacagtgcaagccgtgagattctccatactcatacagatctggtcaagagc
aatgaacttaaagaccttctgccatatggtttcgctattcatcatgctgggttggcaagg
gctgatcgccagcttgttgaggagctatttggtgatgggcatgtgcaagttttggtttct
actgcaactcttgcttggggtgtgaatttgcctgctcacaccgttatcatcaaagggacc
caaatttacaatccagaaaagggtgcatggaccgaactaagtcctctggatgtcatgcag
atgctgggtcgtgcaggaaggccccagtatgattcatatggggagggcataatcattact
ggtcatagtgaactacaatattatctctctctaatgaatcagcagcttcctattgaaagt
cagtttgtgtccaaattggctgaccaattgaatgcagaaattgttcttggaactgttcag
aatgctagagaagcctccaattggattgggtacacttacttgtatgtccgcatgttgcgt
aatcctacactttatggtttagcacctgatgttctcacgagagatataacattggaggag
aggagggctgatttgatccattctgctgcaaccatactggacaaaaataatttggttaag
tacgatagaaaaagcggatatttccaggtcacggacttgggtcgcattgctagttactat
tatataacgcatgggacgatatcaacgtacaatgagcatctgaagcccactatgggagat
attgagctttgtcggttgttttcacttagtgaagaattcaaatatgttaccgtgcggcag
gatgagaagatggagctggcaaagcttttggatcgtgttccgattcccataaaggaaagc
ttggaagagcctagtgccaagattaatgttttgctgcaagcatatatttcacagttgaag
cttgaaggcctttcattaacatctgacatggtgttcattactcagagtgcgggacgtctt
atgcgagctctttttgagatagttttgaaacgtggatgggcacaattggctgagaaagct
ttgaacttgtgcaaaatggttaacaggaggatgtggagtgtccaaacaccacttcgccaa
ttcaatggaatccaaaatgatcttttgatgaagttagagaagaaggatttggcctgggaa
aggtattatgacctttcgtctcaggaaataggggagcttattcgcatcccaaagatggga
aggttgctccataaattcgtccaccaattccccaaacttaacctagcagcacatgttcag
ccaattactcgcactgttttgagggttgagctgacaataacaccagactttcagtgggag
gacaaagttcatggatatgtggagccattttgggtgattgtggaggataatgatggtgaa
tatattcttcatcatgaatatttcatgctgaagcagcagtatattgacgaggatcacact
ttgagtttcacggtcccaatttatgaaccgttgccaccacaatacttcatccgcgttgtg
tcagatagatggcttgggtcacaaactgttttacctgtttctttcaggcatctcatcttg
ccagaaaaatatcctccaccaacggagctattggacttgcaaccactgcctgtgactgcc
ttaaggaatccatcatacgaagctctttataaggattttaagcattttaatcctgttcag
acgcaggtattcactgttttgtataacacagatgacaatgttttagttgctgcaccaaca
gggagtgggaagaccatatgtgcagagtttgctatcttaaggaatcatcaaaaagggcct
gagagtgtcatgcgtgttgtctatattgcaccccttgaagctctggccaaggaacgatat
cgtgattgggagaggaagtttggaaagggtggtcttaaaatgcgggtggttgaattaact
ggggaaacagctaccgatttgaaactccttgagaagggtcagataataataagtacccca
gagaaatgggatgctttgtcccgccgctggaaacaaaggaaacatgttcaacaggttagc
cttttcatcattgatgaactccatttaattgggggtcgaggtggtcccatattggaggtg
attgtttccaggatgagatacattgcaagtcaagttgaggacaagattcgtattgtggct
ctgtcaacttcacttgcaaatgcaaaggatcttggggaatggataggtgctacctcccat
ggccttttcaattttcctcctggtgtacgtcctgtgccattggaaatacacattcaggga
gtggatatagctaattttgaagcgaggatgcaagctatgacgaaaccaacatacactgca
attgttcaacataccaagaatgggaagcctgctcttgtttttgttccaacaaggaagcat
gtccgactcactgctgtggatctgatgacttactctgttgtggaaggaggagggaagaag
ccatttttattgaagacccctgaagaaattgaacctttcattgacaaaattaatgatgaa
atgttgaaagccactttacgagagggagtgggctacttgcatgagggcttaacgaatttg
gatcaagaagttgtgtcacagctgttcgaggctgggtggattcaggtttgtgtcatgagc
agttctatgtgttggggtttgtcattatcagcccacttggtggttgtgatgggaacacaa
tattatgatggtcgggaaaattctcacactgattaccctgttactgatctgttgcaaatg
atgggtcatgcaagtcgacctttattagataattctgggaaatgtgtcattctttgccat
gctcctcgtaaagaatactacaagaagttcttatatgaagcattcccagttgaaagccat
ttgcaccactttcttcacgataatttgaatgcagaagttgttgctggaattattgagaac
aagcaaaatgctgtggattatcttacatggacatttatgtacaggaggctcacacaaaat
cccaactattacaatcttcagggagttagtcacaggcacctttctgatcacttgtcagag
cttgtagagaatacattgagtgatttggaagcaagcaagtgtgttggtattgaagatgat
atggacctttctccttcgaatcttggcttgatagcatcatattattacatcagttacact
accatagagcgtttcagttcttctttgacttccaaaacgaagatgaagggtcttctggag
atcctggcttcagcttcagagtatgcacaaattccaatacgacctggggaggaagaagca
gttcggaggttgattaatcaccagaggttttcatttgaaaatcccaaatgcacggacccg
catgtgaaagcaaatgcgcttcttcaggcccactttgcaaggcaaactctgggtgggaac
ctatcatcagaccagcgagaagtgcttctttctgcgactagattgcttcaggcaatggtt
gatgttatttcgagcaatggctggctgaaccttgctcttcttgctatggaagtctgccaa
atggtgacacagggcatgtgggagcgtgattctatgcttctacagcttccacacttcaca
aaggagttggccaagagatgccaagaaaaccctggcaagagtgtagagaccgtatttgat
ttggtggagatggaagatgatgagaggcgtgagctactgcagatgtcggatgaacagttg
ctggatattgcgaggttttgcaaccgttttcccaacatcgatatgacctatgaagtgctg
gatagtgacaaggcgagggctgggagggatatgatgctgcaagtcactcttgagcgggat
cttgagggaaggacagaggtgggacctgttgatgctcccaggtaccccaaggccaaagaa
gaaggatggtggcttgtcgttggcgataccaaaactaaccagttgcttgccatcaagagg
gtttccttgcaaaggaaatcaaaggttaagcttgaatttacccctgcagacgctggaaag
aagacgtatacactctatttcatgtgcgattcatatctgggttgtgaccaggagtatacc
ttcactatcgatgtcaaaaaagcagcaggccccgatgaagacagtggggaagagtaa

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