Alnus glutinosa (common alder): 133868223
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Entry
133868223 CDS
T10577
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH12-like
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
aglu Alnus glutinosa (common alder)
Pathway
aglu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133868223
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aglu03041
]
133868223
Enzymes [BR:
aglu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
133868223
Spliceosome [BR:
aglu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
133868223
Complex C
U5 SnRNP specific factors
133868223
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
DUF1127
Motif
Other DBs
NCBI-GeneID:
133868223
NCBI-ProteinID:
XP_062161026
LinkDB
All DBs
Position
5:complement(6622933..6631130)
Genome browser
AA seq
2178 aa
AA seq
DB search
MAHLGGGAEAHARHKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPKSFGDRAF
RGKPPELDEKLQKAKRKKKERDPLAEPQPGRQSKRRRLQEESVLTSSEEGVYQPKTKETR
AAYEAMLSVIQQQLGGQPLSIVSGAADEILAVLKNETFKNPDKKKEIEKLLNPIPNPVFD
QLVSIGRLITDFQDGGDAAGPAAANGDDALDDDVGVAVEFEENEEDDEESDLDMVQEDEE
EDDDVVEANGAGGMQMGGGIDDDDDMREANESMSLNALSIGAYWLQGKISEAFEKQIDPQ
QCQKLAEEVLNILAEGDDREVESKLLVLLQFDKFNLIKFLLRNRLKIVWCTRLARAEDDE
QKKKIEEEMLGLGPELEAIVDQLHATRASAKERQKNLEKSIREEARRLKDESGGDGDRGR
IGLVDRDADSGWGQRQLLDLDSIAFEQGGRLVAAKKIELPDGSYRHSSKGYEEIHVPALK
PKPFDPSEKLIKISDMPDWAQPAFKGMKELNRVQSRVYETALFKADNILLCAPTGAGKTN
VAVLTILQQIALNRNSDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQYYDVKVRELSG
DQSLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESI
VARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVDLEKGLYHFDNSYRPVPLSQQYIG
ITVKKPLQRFQLMNDVCYEKVMGVAGKHQILIFVHSRKETAKTARAIRDTALANDTLGRF
LKEDSASREILHTHTDLVKSNELKDLLPYGFAIHHAGLARADRQLVEELFGDGHVQVLVS
TATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQYDSYGEGIIIT
GHSELQYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAREASNWIGYTYLYVRMLR
NPTLYGLAPDVLTRDITLEERRADLIHSAATILDKNNLVKYDRKSGYFQVTDLGRIASYY
YITHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPIKES
LEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLMRALFEIVLKRGWAQLAEKA
LNLCKMVNRRMWSVQTPLRQFNGIQNDLLMKLEKKDLAWERYYDLSSQEIGELIRIPKMG
RLLHKFVHQFPKLNLAAHVQPITRTVLRVELTITPDFQWEDKVHGYVEPFWVIVEDNDGE
YILHHEYFMLKQQYIDEDHTLSFTVPIYEPLPPQYFIRVVSDRWLGSQTVLPVSFRHLIL
PEKYPPPTELLDLQPLPVTALRNPSYEALYKDFKHFNPVQTQVFTVLYNTDDNVLVAAPT
GSGKTICAEFAILRNHQKGPESVMRVVYIAPLEALAKERYRDWERKFGKGGLKMRVVELT
GETATDLKLLEKGQIIISTPEKWDALSRRWKQRKHVQQVSLFIIDELHLIGGRGGPILEV
IVSRMRYIASQVEDKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQG
VDIANFEARMQAMTKPTYTAIVQHTKNGKPALVFVPTRKHVRLTAVDLMTYSVVEGGGKK
PFLLKTPEEIEPFIDKINDEMLKATLREGVGYLHEGLTNLDQEVVSQLFEAGWIQVCVMS
SSMCWGLSLSAHLVVVMGTQYYDGRENSHTDYPVTDLLQMMGHASRPLLDNSGKCVILCH
APRKEYYKKFLYEAFPVESHLHHFLHDNLNAEVVAGIIENKQNAVDYLTWTFMYRRLTQN
PNYYNLQGVSHRHLSDHLSELVENTLSDLEASKCVGIEDDMDLSPSNLGLIASYYYISYT
TIERFSSSLTSKTKMKGLLEILASASEYAQIPIRPGEEEAVRRLINHQRFSFENPKCTDP
HVKANALLQAHFARQTLGGNLSSDQREVLLSATRLLQAMVDVISSNGWLNLALLAMEVCQ
MVTQGMWERDSMLLQLPHFTKELAKRCQENPGKSVETVFDLVEMEDDERRELLQMSDEQL
LDIARFCNRFPNIDMTYEVLDSDKARAGRDMMLQVTLERDLEGRTEVGPVDAPRYPKAKE
EGWWLVVGDTKTNQLLAIKRVSLQRKSKVKLEFTPADAGKKTYTLYFMCDSYLGCDQEYT
FTIDVKKAAGPDEDSGEE
NT seq
6537 nt
NT seq
+upstream
nt +downstream
nt
atggcgcatctaggcggtggtgcggaagcgcacgccagacacaagcagtacgagtatcga
gccaactcgagtttggtcctgaccaccgactctcgaccacgagacacccacgaacccacc
ggggagcccgagtctctttggggcaagatcgatcccaagagcttcggcgatagggccttc
cgtgggaaaccccctgaactggacgagaagcttcagaaagccaagaggaagaagaaggaa
cgtgacccgcttgccgaaccccaacctggccgccagagcaagcggcgccgccttcaagaa
gagagcgtattgacttcatccgaggaaggtgtataccagccgaagacgaaggagacgaga
gctgcgtatgaggctatgctgagtgtcattcaacagcagttgggtggtcagcctctcagt
attgttagtggtgccgccgatgagatcttggctgtccttaagaatgagacatttaagaac
cctgacaagaagaaggagattgagaagcttctgaatccgattcccaacccagtttttgat
cagttggtttcaatcgggaggcttatcacggactttcaagatgggggtgatgcagctgga
cctgctgctgccaatggtgatgatgctcttgacgacgatgtgggtgtggcagtcgagttt
gaggagaatgaggaggatgatgaggagagtgatcttgatatggtccaggaggatgaagag
gaggacgatgatgtggttgaagccaatggtgctgggggtatgcaaatggggggtgggatt
gatgatgacgatgatatgcgagaagcaaatgagagtatgagccttaatgctctgagcatt
ggtgcttattggcttcaggggaagatctctgaagcatttgaaaagcagattgatccgcaa
cagtgccagaagcttgcagaagaggtccttaatatacttgctgaaggtgatgacagggaa
gttgagtcaaagctgttggtgcttctccaatttgataagtttaaccttattaagtttctg
ttgaggaatcgattgaagattgtgtggtgtacccggttggcaagggctgaagacgatgaa
cagaagaagaagatcgaggaggagatgctgggtttgggtccagaattggaggcaattgtt
gatcagttgcatgccacaagggctagtgcaaaagaaaggcaaaagaacttggagaagagt
attcgagaagaggctcgccggttgaaggatgagagcggtggagatggggacagaggtagg
atagggcttgttgatagggatgcagacagtggttggggccagcggcagttgcttgatctt
gacagtattgcttttgaacaaggtggtcgtttggtggcggcaaaaaagattgagcttcct
gatgggtcttacaggcattctagcaagggatatgaagaaattcatgtgcccgcattgaag
ccaaaaccatttgatccaagtgagaaacttataaaaatatctgacatgccagactgggca
cagccagctttcaaaggaatgaaggagttgaacagggtacagagtagagtctatgagact
gccctttttaaagctgacaacatcctcttatgtgctcccactggtgcagggaaaactaat
gttgcagtgctcaccatacttcagcaaatagcattgaacaggaattcggatggttcattc
aaccacagtaattataagattgtatatgttgcgcctatgaaagctcttgtcgctgaagtg
gtcggcaatttgtccaatcgattgcagtattatgatgtcaaggtcagggagcttagtgga
gaccagtcacttactcgtcaacaaattgaagaaactcaaattattgtcacaactcccgag
aagtgggatatcattaccaggaagtcaggtgatcgaacttatacacagcttgtgaagctt
cttatcattgatgagattcatctccttcacgataacagaggacctgtgcttgaaagtatt
gtcgctagaactgttaggcagattgaaactacaaaagagcatattcggttggttgggttg
tctgctacactccctaactatgaagatgtggctttgttcttacgggttgatctggaaaaa
ggattataccactttgacaatagttacagacctgtacctctttcccaacagtatattgga
attacagtaaagaagccactgcagaggttccagttgatgaatgatgtctgttatgaaaag
gtaatgggtgtagcaggaaaacatcaaatccttatttttgtccactcgaggaaagaaaca
gccaaaacagctcgtgccatacgagatactgctcttgctaacgatactcttggtagattt
ttgaaagaggacagtgcaagccgtgagattctccatactcatacagatctggtcaagagc
aatgaacttaaagaccttctgccatatggtttcgctattcatcatgctgggttggcaagg
gctgatcgccagcttgttgaggagctatttggtgatgggcatgtgcaagttttggtttct
actgcaactcttgcttggggtgtgaatttgcctgctcacaccgttatcatcaaagggacc
caaatttacaatccagaaaagggtgcatggaccgaactaagtcctctggatgtcatgcag
atgctgggtcgtgcaggaaggccccagtatgattcatatggggagggcataatcattact
ggtcatagtgaactacaatattatctctctctaatgaatcagcagcttcctattgaaagt
cagtttgtgtccaaattggctgaccaattgaatgcagaaattgttcttggaactgttcag
aatgctagagaagcctccaattggattgggtacacttacttgtatgtccgcatgttgcgt
aatcctacactttatggtttagcacctgatgttctcacgagagatataacattggaggag
aggagggctgatttgatccattctgctgcaaccatactggacaaaaataatttggttaag
tacgatagaaaaagcggatatttccaggtcacggacttgggtcgcattgctagttactat
tatataacgcatgggacgatatcaacgtacaatgagcatctgaagcccactatgggagat
attgagctttgtcggttgttttcacttagtgaagaattcaaatatgttaccgtgcggcag
gatgagaagatggagctggcaaagcttttggatcgtgttccgattcccataaaggaaagc
ttggaagagcctagtgccaagattaatgttttgctgcaagcatatatttcacagttgaag
cttgaaggcctttcattaacatctgacatggtgttcattactcagagtgcgggacgtctt
atgcgagctctttttgagatagttttgaaacgtggatgggcacaattggctgagaaagct
ttgaacttgtgcaaaatggttaacaggaggatgtggagtgtccaaacaccacttcgccaa
ttcaatggaatccaaaatgatcttttgatgaagttagagaagaaggatttggcctgggaa
aggtattatgacctttcgtctcaggaaataggggagcttattcgcatcccaaagatggga
aggttgctccataaattcgtccaccaattccccaaacttaacctagcagcacatgttcag
ccaattactcgcactgttttgagggttgagctgacaataacaccagactttcagtgggag
gacaaagttcatggatatgtggagccattttgggtgattgtggaggataatgatggtgaa
tatattcttcatcatgaatatttcatgctgaagcagcagtatattgacgaggatcacact
ttgagtttcacggtcccaatttatgaaccgttgccaccacaatacttcatccgcgttgtg
tcagatagatggcttgggtcacaaactgttttacctgtttctttcaggcatctcatcttg
ccagaaaaatatcctccaccaacggagctattggacttgcaaccactgcctgtgactgcc
ttaaggaatccatcatacgaagctctttataaggattttaagcattttaatcctgttcag
acgcaggtattcactgttttgtataacacagatgacaatgttttagttgctgcaccaaca
gggagtgggaagaccatatgtgcagagtttgctatcttaaggaatcatcaaaaagggcct
gagagtgtcatgcgtgttgtctatattgcaccccttgaagctctggccaaggaacgatat
cgtgattgggagaggaagtttggaaagggtggtcttaaaatgcgggtggttgaattaact
ggggaaacagctaccgatttgaaactccttgagaagggtcagataataataagtacccca
gagaaatgggatgctttgtcccgccgctggaaacaaaggaaacatgttcaacaggttagc
cttttcatcattgatgaactccatttaattgggggtcgaggtggtcccatattggaggtg
attgtttccaggatgagatacattgcaagtcaagttgaggacaagattcgtattgtggct
ctgtcaacttcacttgcaaatgcaaaggatcttggggaatggataggtgctacctcccat
ggccttttcaattttcctcctggtgtacgtcctgtgccattggaaatacacattcaggga
gtggatatagctaattttgaagcgaggatgcaagctatgacgaaaccaacatacactgca
attgttcaacataccaagaatgggaagcctgctcttgtttttgttccaacaaggaagcat
gtccgactcactgctgtggatctgatgacttactctgttgtggaaggaggagggaagaag
ccatttttattgaagacccctgaagaaattgaacctttcattgacaaaattaatgatgaa
atgttgaaagccactttacgagagggagtgggctacttgcatgagggcttaacgaatttg
gatcaagaagttgtgtcacagctgttcgaggctgggtggattcaggtttgtgtcatgagc
agttctatgtgttggggtttgtcattatcagcccacttggtggttgtgatgggaacacaa
tattatgatggtcgggaaaattctcacactgattaccctgttactgatctgttgcaaatg
atgggtcatgcaagtcgacctttattagataattctgggaaatgtgtcattctttgccat
gctcctcgtaaagaatactacaagaagttcttatatgaagcattcccagttgaaagccat
ttgcaccactttcttcacgataatttgaatgcagaagttgttgctggaattattgagaac
aagcaaaatgctgtggattatcttacatggacatttatgtacaggaggctcacacaaaat
cccaactattacaatcttcagggagttagtcacaggcacctttctgatcacttgtcagag
cttgtagagaatacattgagtgatttggaagcaagcaagtgtgttggtattgaagatgat
atggacctttctccttcgaatcttggcttgatagcatcatattattacatcagttacact
accatagagcgtttcagttcttctttgacttccaaaacgaagatgaagggtcttctggag
atcctggcttcagcttcagagtatgcacaaattccaatacgacctggggaggaagaagca
gttcggaggttgattaatcaccagaggttttcatttgaaaatcccaaatgcacggacccg
catgtgaaagcaaatgcgcttcttcaggcccactttgcaaggcaaactctgggtgggaac
ctatcatcagaccagcgagaagtgcttctttctgcgactagattgcttcaggcaatggtt
gatgttatttcgagcaatggctggctgaaccttgctcttcttgctatggaagtctgccaa
atggtgacacagggcatgtgggagcgtgattctatgcttctacagcttccacacttcaca
aaggagttggccaagagatgccaagaaaaccctggcaagagtgtagagaccgtatttgat
ttggtggagatggaagatgatgagaggcgtgagctactgcagatgtcggatgaacagttg
ctggatattgcgaggttttgcaaccgttttcccaacatcgatatgacctatgaagtgctg
gatagtgacaaggcgagggctgggagggatatgatgctgcaagtcactcttgagcgggat
cttgagggaaggacagaggtgggacctgttgatgctcccaggtaccccaaggccaaagaa
gaaggatggtggcttgtcgttggcgataccaaaactaaccagttgcttgccatcaagagg
gtttccttgcaaaggaaatcaaaggttaagcttgaatttacccctgcagacgctggaaag
aagacgtatacactctatttcatgtgcgattcatatctgggttgtgaccaggagtatacc
ttcactatcgatgtcaaaaaagcagcaggccccgatgaagacagtggggaagagtaa
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integrated database retrieval system
