Alnus glutinosa (common alder): 133868488
Help
Entry
133868488 CDS
T10577
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1-like
KO
K14485
transport inhibitor response 1
Organism
aglu Alnus glutinosa (common alder)
Pathway
aglu04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
133868488
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
aglu04121
]
133868488
Ubiquitin system [BR:
aglu04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
133868488
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
LRR_6
LRR_4
F-box-like
F-box
Motif
Other DBs
NCBI-GeneID:
133868488
NCBI-ProteinID:
XP_062161374
LinkDB
All DBs
Position
5:complement(6125712..6131682)
Genome browser
AA seq
584 aa
AA seq
DB search
MDPMRKKDCHDSGESVRVASTFPDEVLERVLALVKSHKDRSSVSLVCKDWYDAERWSRTH
VFIGNCYSVSPEIVVRRFPNVRSVTLKGKPRFSDFNLVPPNWGADIRCWLVVFGAKYRCL
EELRLKRMTVSDESLEFLALSFPNFKALSLLSCDGFSTDGLAAIASHCKNLTELNIQEND
IYDKSGSWLSCFPENFTSLEVLNFAYLHNDVNFEALERLVSRCKSLNVLKVNKNITLEQL
QRLLICAPQLAELGTGSFLHELTDRQYSELKRSFNNCNNLNVLSGLSEVAAIYLPALYPA
CTNLTFLNLSDAALQSEELAKLLVHCPRLQRLWVLDTVEDKGLEAIGSNCPLLEELRVFP
SDPFEEGIVHGVTESGFIAVSYGCRRLHYVLYFCRQMTNAAVATIVQNCPDFTHFRLCIM
NPCQPDYLSNEPMDEAFCAVVKTCTKLRRLAVSGLLTDLTFEYIGKYAKNLETLSVAFAG
SSDWGMQCVLGGCPKLRKLEIRDCPFGNAALLSGFEKYESMRSLWMSDCKVTMNGCRFLA
KEMPRLNVEVMKEDGNDDSQADKVYVYRSVAGPRRDAPPFVLTL
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atggatcctatgagaaagaaggactgccatgactcgggcgagtcggtccgggtggcctcg
acattcccagacgaggttctggagcgagttctggctctggtgaagtcccacaaggaccgg
agctcggtttctctggtctgcaaggactggtatgacgccgagcggtggtcaaggacccac
gtgttcattggaaactgctactcggtgtcaccggagatcgtggtccggcggttcccgaac
gttcggagcgtgactctgaaagggaagccccggttttcagattttaatctggttcctccc
aattggggtgctgatattcgttgttggctggtggtttttggggctaagtaccggtgtctt
gaggagctgaggctcaagagaatgactgtgagcgacgagagcttggagtttttggctctt
tcttttcccaatttcaaggctctttcgcttctcagctgtgatgggttcagtactgatggg
cttgccgccattgccagtcactgcaagaatttgactgagctcaacatacaggagaatgac
atctatgataaaagtggtagttggttgagttgcttccctgaaaacttcacatcattggaa
gtactaaactttgcctatttgcataatgatgtcaattttgaagctcttgagagactggtt
agtaggtgcaaatcgttgaatgttttaaaggttaataaaaatataaccttggaacaatta
caaaggctgcttatttgtgcacctcaattagcagagcttggtactggctcatttctgcat
gagcttacggaccgccagtactcagaacttaaaaggtcattcaacaactgcaataatctc
aacgtactctctggcttgtcagaagttgcagccatatatctcccagctctataccctgcc
tgtacaaatttgactttcttgaatttgagcgatgctgctctgcaaagtgaggaacttgct
aagcttcttgttcactgtccacgtcttcagcgcctatgggtccttgacacagttgaagac
aagggtttggaggccattggatccaactgtcctctgcttgaggaactccgtgtcttccca
tccgatccctttgaggagggtattgtacatggggtgactgaatctgggttcattgctgtc
tcttatggctgcaggagactacactatgttctctacttttgtcgacagatgactaatgct
gctgtagcaaccattgtgcagaactgtcccgatttcacccacttcaggctttgcataatg
aacccatgccagccagattacctttcaaatgagcctatggatgaggctttttgtgcagtg
gtgaaaacttgcactaaactccggaggcttgcagtttcaggtttattgactgacctgact
tttgagtacattgggaagtatgccaaaaacttggaaactctttcggttgcttttgctggg
agcagtgattggggtatgcagtgtgtattgggaggttgtccaaagctgaggaaacttgag
ataagggactgcccatttgggaatgcagcattactatcaggttttgagaaatatgaatcc
atgaggtcactatggatgtcagactgcaaagtgacaatgaatgggtgtagattcttggca
aaagagatgcccaggttgaatgtggaggtaatgaaggaagacgggaatgatgacagtcag
gctgacaaagtttatgtttatcgttctgttgcaggaccaagaagggatgctccacctttt
gttctcactctctga
DBGET
integrated database retrieval system
