Alnus glutinosa (common alder): 133868588
Help
Entry
133868588 CDS
T10577
Name
(RefSeq) transcription initiation factor IIF subunit alpha
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
aglu Alnus glutinosa (common alder)
Pathway
aglu03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
133868588
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aglu03021
]
133868588
Transcription machinery [BR:
aglu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
133868588
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
zf-C3HC4_3
DUF5679
Motif
Other DBs
NCBI-GeneID:
133868588
NCBI-ProteinID:
XP_062161501
LinkDB
All DBs
Position
5:1525353..1533822
Genome browser
AA seq
543 aa
AA seq
DB search
MSFDLMLKSSCSGCGSTSDLYGSNCKHMTLCLTCGKTMAENRGKCYDCGATVNRLIREYN
VRASSGSDKNYFIGRFVTGLPNFSKKKSAENKWSLHKEGLQGRQLTDALREKYKNKPWLL
EDETGQSQYQGHLEGAQSATYYLLMMQGKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKM
KNRKKTADGYERWMMKAANNGAAAFGEVERTDDKDSVVGGGRGRRKTTGDDEEGNVSDKG
EEVEEEEAARKNRLGLNKRSGDDDEEGPRGGDHDLEDDDIEKGDDWEHEEIFTDDDEALG
NNPEEREELAPEVPAPPEIKQDEEDEDEDNEEEGGLSKSGKELKKLLGRAGGLNDSDVED
DDDDDDMEDEIGLSPVLAPKQKDAPKEEPAENSPVKTVPSGSARGTPSASKSAKAKRKLN
GDDAKASSGAPPKKVKTENELKPSLKEETVPTSKSSVSSKGIPSSSSSSSSKTASTSSAG
PVTEEEIRAVLMQKTSVTTQDLVANFKARLRSPEDKKAFADILRKISKIQRTNGSNYVVL
RDR
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttcgatctgatgttgaagtcgtcgtgtagtggatgtggatcgacctcggacttg
tacggaagcaattgcaagcacatgactctgtgcttgacctgtggcaaaaccatggccgag
aatcgtggcaagtgctacgactgtggcgccaccgtcaatcgcttgattagagaatacaat
gttcgtgcgagttctggcagtgacaagaattactttattggtagattcgtgactgggttg
ccaaatttttcgaagaaaaagtctgctgagaataaatggtctctccataaagaagggcta
caaggacgccaacttactgatgccttgcgggagaagtacaagaataaaccatggctattg
gaggatgaaacagggcaatctcagtaccaaggtcatcttgaaggtgcacaatctgctaca
tactacctgctaatgatgcaagggaaggagtttgttgctattcctgctggttcttggtac
aactttaacaaggttgcacaatataagcaacttacgctggaggaagcagaagaaaagatg
aagaacaggaaaaagactgcagatggatatgaaagatggatgatgaaagctgcaaataat
ggagctgctgcatttggtgaagtagagaggactgatgacaaggatagtgttgtgggtggt
gggagagggcgtagaaaaacaactggtgatgatgaggaaggtaatgtttcagacaaaggg
gaggaggttgaagaagaagaggcagcaaggaagaatagattgggacttaacaagagaagt
ggtgacgatgatgaggaaggtccgaggggtggtgatcatgatttggaagatgatgatatt
gagaagggtgatgattgggagcatgaagaaatttttactgatgacgatgaagcccttggt
aataatcctgaggaaagggaagaattggcccctgaagttcctgctcctccagaaattaag
caggatgaagaagacgaggatgaagataacgaagaggaggggggactgagcaaatctgga
aaagagttgaagaagctgcttgggcgagctggtgggcttaatgattcagatgttgaggat
gatgacgatgacgatgatatggaagatgagattggcctttctcctgtgctagctccaaag
cagaaggatgcacctaaagaggaacctgctgaaaacagtcctgtcaaaacagtgccttct
ggatccgctcggggaaccccatctgcctctaagtctgcaaaggcgaagagaaaattaaat
ggtgatgatgcaaaagcatctagtggtgcacctccaaagaaggtgaagacagaaaatgaa
ttaaaaccttctttgaaagaagaaactgtgcctacttctaagagtagtgtgtcttcaaaa
ggcataccatcatcatcatcatcatcatcatcaaaaactgcgtcaacatcatctgctggg
cctgtcactgaagaagaaatcagggctgttttaatgcaaaaaacatcagtgacgacacag
gatcttgttgctaattttaaggctagactaagatccccggaggacaagaaggcctttgca
gacatcttgaggaaaatttcaaagatacagaggacgaatgggtctaactatgttgttttg
agggacagatga
DBGET
integrated database retrieval system
