Alnus glutinosa (common alder): 133868953
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Entry
133868953 CDS
T10577
Name
(RefSeq) probable CCR4-associated factor 1 homolog 11
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
aglu Alnus glutinosa (common alder)
Pathway
aglu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133868953
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aglu03019
]
133868953
Messenger RNA biogenesis [BR:
aglu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133868953
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
133868953
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
133868953
NCBI-ProteinID:
XP_062161928
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All DBs
Position
5:complement(10795323..10796264)
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AA seq
313 aa
AA seq
DB search
MATAAAPSPITVREVWQHNLEHEISEIARVLPQHRFVALDTEFPGHVFPVTCRNRTQLSP
AENYLSMKRNVDSTKIIQLGLSLCDASGDSCYVWQFNFKDFSKENDLFNPDSIALLERQG
IDFQKNREKGVDSVDFARLIKQIGLLRNRTITWSTFHGAYDFGYLIKILMGRELPIDLMG
FMGLVVHFFWYRVFDIKNMIRLCDGLYGGLESVAKALGVDRVAGSSHQAGSDSLLTLHTI
MKLKDGRFFGKFLSEFQLVLYGLEVDTALLTAPKKPKLVYVLQPGSCQRSFRGCFPYTYC
APRVIQGRYGYYV
NT seq
942 nt
NT seq
+upstream
nt +downstream
nt
atggcgacagccgcagctccgagtccaatcaccgttcgcgaggtctggcaacacaacctc
gagcatgaaatttccgaaatcgcacgggttcttcctcaacatcgtttcgtcgccttggac
accgagttccctggccatgtcttccctgttacctgccgcaaccgtactcaactgtctccc
gctgagaactacctgtcaatgaagcggaatgttgattctaccaaaatcattcaactgggt
ctttcactgtgcgatgccagcggcgattcttgttatgtttggcaatttaatttcaaagac
ttcagcaaggagaatgatctgttcaatcctgactcaatcgcgttactagagcgccaggga
atcgacttccagaagaaccgagaaaagggtgtagattcggtggactttgcaaggctaatc
aaacagattggtctcttaagaaatcggacgatcacttggtcaactttccacggagcttat
gattttggttacttgatcaaaatcctgatggggcgagaactgccgatcgatctgatgggg
tttatgggtctggtggtacactttttctggtacagggtgtttgatataaaaaatatgatc
agactctgtgatggactctatggagggttggagagtgtagccaaagcacttggggtggat
cgtgtggccggatcgagtcaccaggctgggtctgatagtctgctaacattgcataccata
atgaaactcaaagatggtcgtttctttgggaaatttttgagcgaatttcagttggttctt
tacggtttggaagtcgacactgcgctgttgaccgcaccaaaaaagccgaagttggtttac
gtattgcaacctggaagttgtcaacgcagcttcagaggatgttttccatacacttactgt
gctccaagagtgattcagggtagatacggatattatgtatga
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