Alnus glutinosa (common alder): 133870089
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Entry
133870089 CDS
T10577
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
aglu Alnus glutinosa (common alder)
Pathway
aglu03040
Spliceosome
Brite
Enzymes [BR:
aglu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
133870089
Spliceosome [BR:
aglu03041
]
Complex C
Other components
Step II factors
133870089
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
ABC_tran
AAA_30
nSTAND3
AAA_16
TsaE
Cas3-like_C_2
Flavi_DEAD
Sigma54_activ_2
PhoH
Motif
Other DBs
NCBI-GeneID:
133870089
NCBI-ProteinID:
XP_062163119
LinkDB
All DBs
Position
6:27589948..27594655
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AA seq
1191 aa
AA seq
DB search
MAPAPKDEGLKKLEFLSLVSKVCTELETHLGFGDKILAEFITDLGRNCETVDEFDAKLKE
NGAEMPDYFVRTLLTIIHAILPPKPKSEKELKKESASDGRKTKYSGLAISDNTERVKEIE
REIELETRERRGDREEREEEGEDRHRRRDWDRDRDRDRDRDRDRDRDKDRDRRDRRRDRY
DRDERRRDRDTEEDGDDRRDYRSRERHGDRHEKHRREEENVDNRDRNRRYQSDEPELYKV
YKGRVSRVMDTGCFVQLNDLKGKEGLVHVSQIATRRIGNAKDVVKRDQEVYVKVISISGQ
KLSLSMRDVDQNTGKDLLPLKKSSEEDTMRANPSSGSKEGPVMRTGLSGIRILEENDTAP
SRRPLKRMSSPEIWEAKQLIASGVLSVADYPTYDEEGDGLMYQEEGAEEELEIEMNEDEP
SFLQGQSRYSMDMSPVKIFKNPEGSLSRAAALQSALIKERREVREQQQRTMLDSIPKDLN
RPWEDPMPETGERHLAQELRGVGLSAYDMPEWKKDAYGKSISFGQRSKLSIQEQRQSLPI
YKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVA
KRVAEEFGCRLGEEVGYAIRFEDCTGPETVIKYMTDGMLLRELLIDESLSQYSVVMLDEA
HERTIHTDVLFGLLKQLVKRRPELRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEIL
YTKQPESDYLDASLITVLQIHLMEPEGDILLFLTGQEEIDYACQSLYERMKGLGGNVPEL
IILPVYSALPSEMQSRIFEPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNS
KQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMSPTSIPEIQRINLGA
TTLNMKAMGINDLLSFDFMDPPSPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLDP
PLSKMLLASVDLGCSDEILTIIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLT
VYDAWKNNNFSGPWCFENFVQSRSLRRAQDVRKQLLTVMDKYKLDVVSAGRNFMKIRKAI
TAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTV
IDPKWLVELAPRFFKVADPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
NT seq
3576 nt
NT seq
+upstream
nt +downstream
nt
atggctcccgctcccaaagacgaaggtttgaagaagctcgagttcctttccctcgtctcc
aaggtctgcacggaactggaaacgcatctagggttcggtgacaaaattctcgccgagttc
atcaccgacctggggaggaactgcgagaccgtcgacgaattcgacgcgaagctgaaggag
aacggcgctgagatgcccgattacttcgtccgaacgcttctgacgataatacacgccatt
ctccctccgaagcccaagtcggagaaggaattgaagaaagagagcgcttcggatggtagg
aagaccaagtactcggggctggcgatctccgataatactgagagagttaaggagatcgag
agggaaatcgaattggagacccgcgagcggcgtggagacagagaagaacgtgaagaagaa
ggagaagacaggcatagacgaagagattgggacagagatagagatagagacagagacaga
gacagagacagagacagagataaagacagagatagaagagataggcgtagggatagatac
gatagagatgagaggcgtagagatagggatactgaagaggacggggatgatagaagggat
tataggagtagggaaaggcacggggatcggcacgagaagcataggagagaagaggagaat
gtggataatagggatagaaatcggcggtaccaatccgatgagccggaattgtataaggtt
tacaagggcagggtttcgagagtgatggacacgggctgcttcgtgcaattgaatgatctg
aagggtaaggagggtttggttcacgtttcgcagattgcgactcggcggattggtaatgcc
aaggacgtagtgaagcgtgatcaggaggtttacgtgaaggtgatatccatttcgggtcag
aagctgagtctttcgatgagggatgttgatcagaacacgggtaaggatttgcttcccttg
aagaagagctcggaggaggatacgatgagggcaaacccatccagcgggtcgaaggagggg
ccagtgatgaggacggggctttcggggattaggattttggaggagaacgacaccgcgccg
tcacggagaccgctgaagaggatgagctcaccggagatatgggaagctaagcaattgatt
gcttctggtgttttgagcgttgcggactatccgacttatgatgaagaaggagatggattg
atgtatcaagaagagggtgctgaggaggagctcgagattgagatgaacgaggatgagcct
tcgttcttgcaagggcaaagcaggtattcaatggatatgtcacctgtgaagattttcaag
aacccagaaggatctttgagtcgtgctgcggccctgcagtctgcgctgataaaggagcgt
agagaagtgagagaacagcaacagaggacaatgttggattctattcccaaggatctgaat
cgtccctgggaagaccctatgccggagacaggtgagaggcatctagcgcaggagctcagg
ggtgttggtttatcagcatatgacatgccagagtggaagaaggatgcttatggaaaatcc
atcagttttgggcagaggtcgaagctctccattcaggaacaaaggcagagcttgccaatc
tacaagttaaagaaggaactcatccaggctgtgcatgacaatcaggtcctggttgtaatt
ggcgagactggttcgggtaagacaactcaggtgactcaataccttgcagaagctggatac
actaccaggggaaaaattggttgtactcagcctcgtagggtggctgcgatgtctgtggcc
aagagggttgctgaagagttcggttgtcggttgggtgaggaagttggatacgctattcga
tttgaagattgtactggtccagagaccgtcatcaagtacatgacggatggtatgcttctt
agggaacttttgattgatgagagcctttctcagtactctgttgttatgctcgacgaagca
catgagaggacaatacacacggatgttcttttcggattactcaagcaactagtgaaacgg
agacccgaacttcgtttgatcgtcacgtctgccacgctggacgcagagaagttttcaggg
tatttcttcaactgtaatatatttacaattcctggtagaacttttcctgtggagatactc
tacaccaaacagcctgaaagtgattatctagatgcatctttaattaccgtgttacagatt
cacttgatggaacctgaaggagacatccttctcttcttgactggtcaggaggagattgat
tatgcctgccagtctctctatgagaggatgaaagggctagggggcaatgtcccggaattg
attattctaccagtatatagtgcgcttcctagtgaaatgcagtcaaggatatttgaacct
gcccctccagggaagaggaaagtggttgtggctacgaatattgccgaggcttctttgacc
attgatgggatattttacgtcattgatcctgggtttgcaaagcaaaatgtgtataactcg
aagcaagggcttgattcactggtcattactcctatttcacaagcatcagctaagcaacga
gctgggcgtgctgggcgtacgggacctgggaaatgttaccgcctctacactgagagtgca
taccgcaatgagatgtcccctacttcaattcccgaaatccagaggataaatcttggggct
actacgcttaacatgaaagctatggggataaatgatcttctgtcttttgatttcatggat
ccaccttcacctcaagctctcatttctgccatggaacagctgtacagtctaggagctctt
gatgaggaggggcttctgaccaaattgggccggaaaatggcagaatttcctcttgatccg
ccattatctaagatgctgcttgccagtgtggaccttggatgcagtgatgagattttgaca
atcattgcaatgattcaaacgggaaatatcttctacaggcctagggagaaacaagcacaa
gcagatcagaagagggctaagtttttccagccagagggagaccatctgacattacttaca
gtttatgacgcttggaaaaataataacttttctggaccatggtgttttgagaactttgtt
cagtctagatccttgaggagggcacaggatgtcagaaaacagctactcaccgtcatggac
aaatataaattagatgttgtgagtgcaggaaggaattttatgaagataaggaaggcaatt
actgcaggattctttttccatgcggctagaaaggacccacaggagggctataggacccta
gttgagaaccaacccgtttatatccatcctagcagtgctcttttccagagacaacctgat
tgggtcatctaccatgagctggtgatgactacaaaggagtacatgcgagaggtcacagtt
atagatcccaaatggcttgtagaactggcaccaagattcttcaaagtggcagatcctaca
aagatgagcaagcgcaaaagacaagaaagaattgaaccgctttatgacagatatcatgaa
cccaactcttggcgtctgagtaaacgtcgtgcttga
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