Alnus glutinosa (common alder): 133870537
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Entry
133870537 CDS
T10577
Name
(RefSeq) tetratricopeptide repeat protein SKI3
KO
K12600
superkiller protein 3
Organism
aglu Alnus glutinosa (common alder)
Pathway
aglu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133870537
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aglu03019
]
133870537
Messenger RNA biogenesis [BR:
aglu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
133870537
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_11
TPR_2
TPR_17
TPR_16
TPR_14
TPR_19
TPR_CcmH_CycH
TPR_9
TPR_8
TPR_7
TPR_12
ARM_TT21_C
TPR_6
TPR_20
BTAD
TPR_10
NatA_aux_su
Y2_Tnp
DUF6584
NTF2
Motif
Other DBs
NCBI-GeneID:
133870537
NCBI-ProteinID:
XP_062163686
LinkDB
All DBs
Position
6:30296268..30310122
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AA seq
1179 aa
AA seq
DB search
MEKTEEESEEGVLRRLEESVNARPDDPSLHFDLGVLLWEKGGEWEKEKAAEHFVLSAKLN
PQNGAAFRYLGHYYAQVSADTQRVLKCYQRAVSLNPDDSHSGEALCDLLDQQGKESLEAS
LCREASAKSPKAFWAFRRLGYLQLHQKKWSEAVQSLQHAIRGYPTSADLWQALGLAYQRL
GRFTAAVKSYGRAIELDDTNVFALVESGNIFLMLGSFKKGVEQFLQALDISPQSVSAQYG
LAAGLLGLAKECINLGAFRWGASLLEEASSVAKAGTHLAGNISCIWKLHGDIQLAYAKCF
PWTEQGQGLEFDAEAFNASILSWKQTCCIAAVSAKCSYQRALYLAPWQANIYTDIAIASE
FISSLNKSYRNNLNAWQLSEKMAFGALLLEGDNIEFWVVLGCLSDHNALKQHALIRGLQL
DVSLAVSWAYLGKLYRKEGAKQLAKQAFDCARSIDPSLSLPWAGMSADFHARDLAPDEAF
ESCLRAVQILPVAEFQIGLAKLALLSGHLSSSRVLGAIQQAVQHAPHSPESHNLNGLVCE
SRFDYQSAAVAYRRARCTISSCSASVSKSYTRDISLNLARSLTKAGNAIDALLECENLNK
EGMLDAEGLQIYAFSLWQLGKQDLALSLVRNLAVSVSTMEQKSVAAPVSFICRMLYCISG
LDSAISSILKMPKKLFQNSRVSFIVSAIHALDQSNRLESVISSSRSFVQSPAEVAGMHFL
IALSKLVKHGTEFCLGVQSGVAHLRKALHMFPNSSLMRNSLGYLLLSSKEWNDTHFATRC
CKIDASDCANKEGLKSASEILGAGAVACYAIGNKNPKFSFPTCTYQCLKEPGAIQQLQKC
LRQEPWNHNVQYLLILNFLQKAREERFPRHLCIVLKRLISVALSSDLYTKTDMSYKKFQL
LLCASEISLQSEDNIGCINHAKNASTLLLPDDYVFFSHLQLCRAYAAESDSLNLQKEYIR
CLELKTDYHIGWICLKFIELRYNVQNDANILELSFKESSKERNYSWNMWMAVFNLVWGLI
SLWNEDFLSAEEFLAQACSLAGAESCLFLCHGATCMELARQLGGSKFLSLAVKSLTKAQE
TSVIPLPFVAALLAQAEGSLSSKEKWEKNLRLEWFSWPPGMRPAELFFQMHLLARQSKSM
SVSSSNVEFCQSPERWILRAIHTNPSCIRYWKVLQKLLT
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaaacggaagaagaaagcgaagaaggggttctgagacggttggaggagtcggtg
aacgcgcgtcccgatgacccctctcttcattttgatcttggagtcctgttgtgggagaaa
ggaggagaatgggagaaggaaaaagcggcggagcacttcgtactatcggccaaactgaat
cctcaaaacggtgccgctttcaggtatttggggcattattacgcccaagtttccgctgat
acccagcgggttctcaagtgttatcagagagctgtctccctcaaccccgatgattcccat
tctggggaggcgttgtgtgatttgttggaccaacaaggaaaggagagcttggaggcgtcg
ctgtgtagagaagcttcagcaaagtcacccaaggccttttgggcttttcggagattgggt
tacttgcagcttcatcaaaaaaagtggtctgaagctgtacagagtcttcaacatgccatt
cggggctatcctacctctgctgatttatggcaagctctgggtcttgcctaccagcgtttg
ggcaggtttactgctgccgttaagtcttatgggcgagccatcgaattggatgatacaaac
gtatttgctttggtcgaaagtggaaacatctttttgatgcttggttcctttaaaaaggga
gttgagcaatttctgcaagctctggatatttcacctcagagtgtgtctgcacaatatggg
cttgcagcagggctacttggtttggctaaggaatgtattaacttgggagctttcagatgg
ggtgcttcattattagaggaggcatctagtgttgcaaaagcgggtactcatttggctgga
aatatatcatgtatttggaagttgcatggtgatattcagcttgcatatgcgaagtgtttt
ccatggacagagcaaggccagggtttagaatttgatgcggaagcttttaatgcttccatc
ctctcctggaagcagacctgctgtatagctgccgtatctgccaaatgttcttatcagcga
gctttgtacttggccccatggcaagctaatatttatacagacattgcaattgcttcagag
tttatatcctctttgaacaagagttatagaaacaacttaaatgcttggcagctatcagag
aagatggctttcggggccttgttacttgagggtgacaatattgagttttgggtggtattg
ggatgcttgtcggaccataatgcattgaaacaacatgccttaatcaggggtttacaactg
gatgtttctctagctgttagttgggcataccttgggaagctttatcgaaaagagggtgca
aaacaattggcaaagcaagcatttgattgtgctagaagtatagatccttcgctttcatta
ccatgggcaggcatgtcagctgattttcatgctagggatcttgcaccagatgaggctttt
gagagctgcttaagagctgtgcagatattacctgttgcagaattccaaattggtcttgca
aagcttgctctgctctcaggacatctctcgtcttcacgggttcttggagctatccagcag
gctgtgcagcatgcacctcactcccctgaatcacataatttaaatgggctggtttgtgag
tcacgatttgattatcaatctgctgctgttgcttatcggcgggcacgctgcacaatcagc
agttgttcagccagtgtctcaaaatcttataccagagatatatctcttaatttggcaaga
tctcttaccaaggcagggaatgctattgatgctttgctggaatgtgaaaatttaaacaaa
gaaggtatgcttgatgcggaaggtttgcaaatatatgctttctctttatggcaacttggc
aaacaggacttggctctttctttggtgagaaatctggctgtgagtgtttctactatggaa
cagaaatctgttgcggcccctgttagtttcatttgcagaatgctgtattgcatctctggt
ctggattcagcaattagtagtatcctgaaaatgcccaagaagctctttcagaattcaaga
gttagttttatagtgtctgctattcatgctcttgatcaaagtaatcggcttgagtcagtt
atttcaagcagccgatcctttgttcaatctcctgcagaggtcgctggaatgcactttttg
atagcacttagtaaactagtcaaacatggaacagaattctgccttggagttcagagtgga
gttgctcatcttagaaaagctcttcacatgttccctaacagcagtttgatgaggaattca
cttggttatcttttgttatcaagtaaggaatggaatgatactcattttgcaactaggtgt
tgcaaaatagacgcatctgactgtgcaaataaagaaggtttaaaatcagccagcgaaatt
cttggtgctggagcagttgcttgctatgccattggcaataagaatccaaagttttctttt
ccaacatgtacataccagtgcctgaaagaacctggagctatccaacagctgcagaaatgc
ttacgtcaagaaccatggaatcataatgttcagtacttgcttatactcaattttctacaa
aaggcacgcgaagaaagatttcctcgtcatctctgtattgtactcaagcggctaatttct
gtggctctttccagtgatttgtacactaagacagacatgtcttataaaaaattccagctt
ttactttgtgcttctgagatcagcttgcagagtgaggataacattggctgcatcaaccat
gccaaaaatgcttctacacttttgcttcctgacgattatgtcttcttttcacacttacaa
ttgtgccgtgcctatgctgcagaaagtgatagtttaaatcttcagaaagagtatataaga
tgcttggagctcaagacagattatcatattggttggatatgtcttaaatttatagaattg
cgatataatgtgcaaaatgatgccaacatcttagaattgagcttcaaagaatcctcaaaa
gagaggaattactcatggaatatgtggatggctgtgtttaatctggtgtggggtctgatt
tctctatggaacgaggatttcctttctgcagaagagtttcttgcacaagcttgttctttg
gcgggtgctgagagctgcctctttttatgtcatggtgccacctgcatggagcttgccagg
cagttgggtggttcaaagttcttatcgcttgctgtaaagagtctcactaaagctcaagaa
acctctgtcattccattaccttttgtcgcggcattgctggctcaggcagagggaagcctc
agttctaaagaaaagtgggagaaaaacctccgtcttgaatggttttcttggccaccagga
atgagacctgcggaactcttctttcaaatgcatttgcttgcaagacaatcaaaatcgatg
tcggtctcttcatccaatgtggagttctgtcagagtccagagagatggattcttcgggca
atccatacaaacccttcttgtatcagatattggaaggttttgcagaagcttttgacgtga
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