Alnus glutinosa (common alder): 133870741
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Entry
133870741 CDS
T10577
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
aglu Alnus glutinosa (common alder)
Pathway
aglu03013
Nucleocytoplasmic transport
aglu03015
mRNA surveillance pathway
aglu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133870741
09122 Translation
03013 Nucleocytoplasmic transport
133870741
03015 mRNA surveillance pathway
133870741
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aglu03019
]
133870741
03041 Spliceosome [BR:
aglu03041
]
133870741
Enzymes [BR:
aglu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133870741
Messenger RNA biogenesis [BR:
aglu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
133870741
Spliceosome [BR:
aglu03041
]
Complex C
Other components
EJC/TREX
133870741
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
133870741
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
BURP
Motif
Other DBs
NCBI-GeneID:
133870741
NCBI-ProteinID:
XP_062163932
LinkDB
All DBs
Position
6:4301349..4308302
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AA seq
427 aa
AA seq
DB search
MGETRETDGYEEELVDYDDEEAQAPASALKVNGEAAKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVSAIVL
CHTRELAYQICHEFERFSTYLVDLKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILAL
AREKDLSLKNVRHFILDECDKMLESLDMRKDVQEIFKMTPHDKQVMMFSATLSKEIRPVC
KRFMQEPMEIYVDDEAKLTLHGLVQHYIKLSESEKNRKLNDLLDALDFNQVVIFVKSVGR
AAELNKLLKECNFPSICIHSGMSQEERLTRYKGFKEGQSRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSEVLNNVQMRFEVDIKELPEQID
TSTYMPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaaccagggaaaccgatgggtacgaggaagagcttgtagactacgatgacgaa
gaagcccaagcaccggcctcggcgcttaaagttaacggcgaagccgccaagaagggctat
gtaggaattcacagttcagggttcagagacttccttttgaagccagagcttcttcgagct
attgtggactcaggatttgagcatccttccgaagtgcaacatgaatgtattcctcaagct
atcctgggtatggatgtcatttgccaagcgaagtctggaatgggtaaaactgctgttttt
gttctttcaacattgcagcagattgaacctgttgctggacaagtttctgcaattgtgctg
tgtcatacaagggagttagcttaccagatttgtcatgagtttgagaggttcagtacttac
ttagttgatctcaaggttgctgtattctatggcggtgtcaatatcaaagttcacaaggat
ttgctgaaaaatgaatgcccccatattgttgttggaactcctggaagaatattggcattg
gcaagagagaaggatctttctttgaagaatgtgaggcatttcattctggatgaatgtgac
aaaatgcttgaatcacttgacatgaggaaagatgtgcaggagatctttaagatgactcct
catgataaacaagttatgatgttttctgcaacgctcagcaaagaaatccgcccagtttgc
aagagatttatgcaagaaccaatggaaatttatgtcgatgatgaggccaagttgaccctg
catggtcttgttcagcactacatcaaattgagcgagtcggagaaaaaccgcaagttgaat
gacctccttgatgcgttggactttaatcaagttgttatctttgtcaaaagtgtcggtaga
gcagctgagctgaacaagttactcaaggagtgtaatttcccctctatatgcatccattct
gggatgtcccaagaggaaaggttgacacgctataagggtttcaaggaggggcagtcgagg
attcttgtggccacagatttggttggtagggggatagacattgagcgtgttaatattgtc
attaattatgacatgccagattctgcagacacttacttgcacagggttggaagagctggt
cggtttggcaccaaagggcttgcgattacatttgtttcatctgcttctgactcggaggtt
ctcaataatgttcagatgaggtttgaggtggatataaaagaacttcctgagcagattgat
acctctacatatatgccatcgtag
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