Alnus glutinosa (common alder): 133870939
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Entry
133870939 CDS
T10577
Name
(RefSeq) exosome complex exonuclease RRP46 homolog isoform X1
KO
K12590
exosome complex component RRP46
Organism
aglu Alnus glutinosa (common alder)
Pathway
aglu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133870939
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aglu03019
]
133870939
Messenger RNA biogenesis [BR:
aglu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
133870939
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
133870939
NCBI-ProteinID:
XP_062164216
LinkDB
All DBs
Position
6:complement(10214139..10221708)
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AA seq
243 aa
AA seq
DB search
MEIDRVDGRTANQLRPLACSRNILNRAHGSASWSQGDTKVLAAVYGPKVGTKKNENPEKA
CIEVIWKPKTGQIGKPEKEYEMIVKRTLQSICVLTINPNTTTSVIVQVVNDDGSLLPCAI
NAACAALVDAGIPLKHLAVAICCCLADSRYVLLDPTKLEEQKTKAFVYLVFPNLTLSVIS
EGSLKVEGEPVEQAIITSVTQGAMSVDDYLHCLERGRAASAKMSAFLRRSLPPQIPSDSS
KAG
NT seq
732 nt
NT seq
+upstream
nt +downstream
nt
atggaaatagatagagtagatgggcgtacagcgaaccagttgagaccactcgcttgctcc
cgcaacatcctcaaccgtgcccatggctctgccagctggtctcagggagataccaaagtt
cttgctgcagtttatggaccaaaagttggaacaaagaagaatgaaaaccctgagaaggct
tgcattgaagtgatttggaagcctaaaacagggcagattggaaaacctgaaaaggagtat
gagatgatagtgaagaggactttgcaaagcatttgcgttttgactatcaaccctaatacc
accacatcagttattgttcaggttgtcaatgatgatggttctcttctcccatgtgccatc
aatgcagcatgtgctgctcttgtagatgctggaattcctctaaagcatcttgcggtcgca
atttgttgttgtttagcagatagtagatatgtcttactggatcccaccaagctagaagag
cagaaaacgaaagcatttgtatatttggtctttccaaacttgactctttctgtcatatcg
gaaggatcattaaaggtggaaggggagccagtggaacaggcaattattacttctgttacc
caaggtgcaatgtcagtggatgattatcttcactgtcttgaacgaggacgtgctgctagt
gcgaagatgtctgcttttctcaggaggagcttgccaccgcaaatccctagtgactcatct
aaagctgggtga
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