Alnus glutinosa (common alder): 133871023
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Entry
133871023 CDS
T10577
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
aglu Alnus glutinosa (common alder)
Pathway
aglu03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
133871023
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aglu03021
]
133871023
03036 Chromosome and associated proteins [BR:
aglu03036
]
133871023
Transcription machinery [BR:
aglu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
133871023
Coactivators
SAGA/TFTC/STAGA complex
133871023
Chromosome and associated proteins [BR:
aglu03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
133871023
STAGA complex
133871023
TFTC complex
133871023
SAGA complex
133871023
SLIK complex
133871023
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
ANAPC4_WD40
Beta-prop_IFT122_1st
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_SPT8
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
Beta-prop_IP5PC_F
WD40_like
WD_LRWD1
Cytochrom_D1
PALB2_WD40
Beta-prop_VPS8
LisH
Motif
Other DBs
NCBI-GeneID:
133871023
NCBI-ProteinID:
XP_062164343
LinkDB
All DBs
Position
6:2566809..2581365
Genome browser
AA seq
674 aa
AA seq
DB search
MEEDQIEKFVAAYLKKKGFKQAEHAFQEERQQQSSKNNSSSSTTNSLSDPDLAKHLLAFS
ELENGPARYHDGYSKFRSWTYTSLDLYKHELLRVLYPVFIHCFMDLVEKGHVQEARTFFN
SFREDHEMMHSRDLQKLEGVLSPSHLEEMEFAHSLRQSKVKIKICQYSYELLLQYLHKTK
LTTMLGVINEHINFQVSPGQPISISDDTEVVTLTGSSHDEATRINQKEIHWGLLEDSLEE
RLEKGGGLLSDSEKAEGETKEGELDENKKRSGEGAKQGMSIKKLKKDKGVSATGKTGRPE
ANTVPMAPRVKPELTLPVIHTDVEKSILEDLRNRVQLSSVSLPSVSFYTFINTHNGLNCS
SISHDGSLVAGGFSDSSLKIWDMAKLGQEPVGPVLQGENGTTSNEHVLGSRGGKRYTLFQ
GHSGPVYSATFSPLGDFLLSSSADSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYF
ASSSHDRTARIWSMDRILPLRIMAGHLSDVDCVQWHVNCNYIATGSSDKTVRLWDVQSGE
CVRIFIGHRSMVLSLAMSPDGRYLASGDEDGTIMMWDLSTGRCVTPLMGHTSCVWTLAFS
CEGSLLASGSADCTVKLWDVTTSSKAPKTEENKGGNTNRLRSLKTLPTKSTPVYALRFSR
RNLLFAAGALSKSV
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atggaggaagatcaaatagagaagttcgtggcagcgtacctgaagaagaaggggttcaag
caagctgagcacgctttccaagaagaacgacaacagcaatcgagcaagaacaattcatcg
tcctccaccaccaattccctctctgaccctgacctcgccaagcacctcctcgccttctcc
gaattggagaatggtcctgcacgataccatgatggatatagcaagtttaggtcatggact
tatacttcactagatttgtacaagcacgagttgcttcgtgtgctttatcctgtatttatt
cattgtttcatggatctggtggaaaaagggcatgttcaagaagcgcgaacctttttcaat
agcttccgtgaagaccatgaaatgatgcactcgcgagaccttcaaaagttggaaggagtt
ctttctccctctcatctggaggagatggaatttgctcattctcttaggcagagcaaagtg
aaaataaagatatgtcagtactcctatgagctactgctgcagtatctacacaagacaaaa
ttgaccacaatgcttggggttataaatgagcatattaactttcaagtttctccagggcag
cccatctcaatttctgatgacactgaagtcgtaacacttactggaagcagccacgatgag
gccacccggataaatcagaaggaaatacattgggggctgcttgaagattctttagaagaa
cgcttggaaaagggtggaggtttgctctccgattctgaaaaggctgaaggagaaaccaaa
gagggagaattagatgaaaataagaaaagatcaggtgaaggagcaaagcaaggcatgtca
attaaaaagttaaagaaggacaagggtgtaagtgcaacagggaaaactgggcgtcctgag
gctaacactgtacctatggcaccacgagtcaaaccagagcttactttgccagtaattcac
acagatgtagaaaagtctattcttgaagacctaagaaaccgggttcagttgagtagtgta
tcactgccatctgtcagcttttatacattcatcaacacacataatggtttaaactgttca
tcaatatcccatgatggatctttggttgctggtggattttcagactcatcgttgaagatt
tgggacatggcaaagcttgggcaagaacctgttggccctgttttgcagggtgaaaacggt
accacttcaaatgaacatgttttagggtcaagaggtggaaaaagatatacattgtttcaa
ggtcattcagggccggtgtattctgccacttttagtccactgggggattttttactttcc
tcttcagcagactcaacaattcggttatggagcacaaaactaaatgcaaatcttgtctgc
tacaagggccacaattacccagtatgggatgttcagttcagtcctgtaggacattatttt
gccagctcttcacacgatcgaacagcaaggatttggtccatggacagaatactgccttta
aggataatggcagggcacttatctgatgttgattgtgtgcaatggcatgtcaactgcaac
tacattgccactggctctagtgataaaacggtccgattgtgggatgtacaaagtggggag
tgtgtccgaattttcattggtcacaggagtatggttttgtctttggcaatgtcgcctgat
ggccggtatctggcctctggtgatgaagatggcacaatcatgatgtgggacctctcaacc
ggtcggtgtgttacacctttgatgggtcacacctcgtgtgtatggacccttgcttttagt
tgtgaaggttcactacttgcatctgggtctgctgattgcactgtaaaattatgggatgta
actacgagttcaaaggcgccaaagacagaagaaaacaaaggtggaaataccaacagacta
agatcattgaaaactcttccgaccaagtccacccccgtctacgcattgcggttttctcgg
aggaatcttctatttgcagctggggccctctcaaaaagcgtatag
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