Alnus glutinosa (common alder): 133872064
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Entry
133872064 CDS
T10577
Name
(RefSeq) 5'-3' exoribonuclease 3 isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
aglu Alnus glutinosa (common alder)
Pathway
aglu03008
Ribosome biogenesis in eukaryotes
aglu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
133872064
09123 Folding, sorting and degradation
03018 RNA degradation
133872064
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aglu03021
]
133872064
03019 Messenger RNA biogenesis [BR:
aglu03019
]
133872064
03009 Ribosome biogenesis [BR:
aglu03009
]
133872064
03016 Transfer RNA biogenesis [BR:
aglu03016
]
133872064
Transcription machinery [BR:
aglu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
133872064
Messenger RNA biogenesis [BR:
aglu03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
133872064
Ribosome biogenesis [BR:
aglu03009
]
Eukaryotic type
Pre-60S particles
RNases
133872064
Transfer RNA biogenesis [BR:
aglu03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
133872064
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
zf-ANAPC11
Motif
Other DBs
NCBI-GeneID:
133872064
NCBI-ProteinID:
XP_062165558
LinkDB
All DBs
Position
6:27709472..27724180
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AA seq
1126 aa
AA seq
DB search
MGVPAFYRWLAEKYPLVVVDVIEEEPVVIEGIKIPVDTSKPNPNDMEFDNLYLDMNGIIH
PCFHPEDRPSPTTYEEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFR
AAKDAADAAAEEERLREEFESEGRKLPPKQESQVFDSNVITPGTEFMAVLSVALQYYIHL
RLNNDPGWEKIKVILSDANVPGEGEHKIMSYIRLQRNLPGYDPNTRHCLYGLDADLIMLG
LATHEIHFSILREIVFTPGQQDKCFMCGQMGHLAANCEGKAKRKAGEYDEKGDGDVVAKK
PYQFLNIWTLREYLEHEMTIPNPPFKIDLERIVDDFIFMCFFVGNDFLPHMPTLEIREGA
INLLIAIYKKEFRALGGYLTNASKPNLSRVEHFIQAVGSFEDKIFQKRTRLHQRQAERIK
RDKAQARRGDDAEPQVQPESLVPVARYHGSRLASGPSPKPYQQSGFSHSSERSTLVRKDG
QHEQAAARLSGLETKSKQGASARPHKVARLSSAATIGAAIVEAEDSLEIEESENKEELKS
KLKEVLREKSDAFNSQNPEEDKVRLGEPGWKERYYEEKFSGKTPEELDAIRRDVVLKYTE
GLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLGQLDISFELGTPFKPFNQLLGVFPAA
SSHALPEHYRKLMTDPNSPIIDFYPTDFEVDMNGKRFAWQGIAKLPFIDEARLLLEVKKI
EHTLMEEEVRRNSVMFDMLFVKLCHPLSVCISILDEKCKRLTDKERVEVKERIEPEKRAK
CSGGMNGYLSPCAGDPRPPIFRSPVAGMEDIIENQVTCAIYRLPDAHDHITRPLAGVKFP
KKTVNLGDLQPEPVLWHEDSGRKPWENGRKPWENGRKPWENGRKPWENGRHNSSGAISGR
QLGDAAHRLVVNSLQAKVDPNGYGNQMHNPPPSYPVPPYHPPLASYQNDRGHDQVYNRIP
PSRTFQPPRGHHQSSNSNSPTALVYHEDGYNPPYVSSAAHQSSNGSHPQNYDRNNRPVTH
SKGEYSRNVNYPSAGLHQNGGPMYAGRQMAQPPNVVHAQSYQVGYNPYQNYQPPGASHQQ
RGNWAPMANQSIRGGYGRPQQPGNQYSALDRRANKGPPPPPGFGRK
NT seq
3381 nt
NT seq
+upstream
nt +downstream
nt
atgggagttccggctttctacagatggttggcggagaagtacccgttggtggtggtggat
gtgatcgaagaagaaccggttgtgatcgagggcattaaaattccggtcgataccagtaag
ccaaaccctaacgatatggaattcgacaatctctacctcgacatgaacgggattattcac
ccttgctttcaccctgaagataggccttctccaacaacttatgaggaggtatttcagtgt
atgtttgactacattgataggctttttgtgatggtacggcctcgaaagctgctatacatg
gctatcgatggagttgccccaagggctaaaatgaatcaacagcggtctaggcgttttaga
gcagctaaagatgcagcagatgcggcagctgaagaagaacggctaagggaagagttcgag
agcgagggcagaaagcttcctcctaaacaggagtcacaagtttttgattccaatgttatt
acacctggaactgaatttatggctgttctatcagttgcactgcagtactatattcatctc
aggttgaacaatgaccctggttgggaaaaaataaaggtcattctttctgatgccaatgtt
cctggtgaaggggaacacaaaattatgtcatatatccgccttcaaagaaaccttcctggt
tatgacccaaatacacgccattgcctgtatggtttggatgcagatttgataatgttgggt
ttagctacccatgaaattcatttctcaatccttcgagagattgtatttactcctgggcaa
caagacaaatgcttcatgtgtggtcagatgggtcatttagctgcaaattgtgaaggaaag
gcaaaaagaaaggcgggagagtatgatgagaaaggtgatggcgatgttgtcgcaaaaaaa
ccctaccagtttctcaatatttggacgcttagagagtatttggagcatgagatgacaatt
cctaaccctccattcaagattgatttggaacgcattgtggatgattttatcttcatgtgt
ttctttgttggcaatgatttcttaccacatatgccaactttggagattcgtgagggtgct
attaacttgctgattgcaatatacaagaaggaatttagggcattgggagggtatttgacc
aatgcaagcaagccaaatctaagcagggtggagcattttattcaggctgttggatctttt
gaagataagatattccagaaaagaactcgattgcatcagcggcaggctgaaagaataaag
cgtgataaggcacaagcgaggagaggagatgatgcagagcctcaagttcaacctgagtct
ctggttccagttgctcgatatcatggttctcgtcttgcttctggtccttcgcctaaaccc
tatcaacaatcaggatttagtcacagttcagagaggtcaacactcgttagaaaagatggc
caacatgaacaagccgcagcacggttgtcagggcttgaaactaaaagcaaacagggggct
tctgctcggccccataaagttgcacgtttgtcttcagcagctactattggtgctgctatt
gttgaagctgaagatagccttgaaatagaagaaagtgaaaacaaagaagaattaaaatca
aagcttaaggaggtacttcgcgagaaatctgatgcttttaactctcaaaatccggaagaa
gacaaggttagactgggagagccggggtggaaagaaagatattatgaggaaaagttttct
ggaaaaactccggaggagcttgatgcaatacgaagagatgttgtcttgaagtacacagaa
ggtctatgttgggttatgcactattattatgaaggggtatgttcttggcagtggttttat
ccttatcattatgcgccgtttgcttctgatctcaaggatcttggacaactggacataagc
tttgagcttggcactcccttcaaaccgttcaatcagcttctgggagtcttccctgctgca
agttcccatgcacttcctgagcattacaggaagttgatgaccgatccaaattcgcctatt
attgacttttacccaactgattttgaagtggatatgaatggcaaaagatttgcttggcag
ggtattgcaaagttgccgtttattgatgaagcccgccttcttttggaagttaagaaaatt
gaacatacattgatggaggaggaggtacggcgaaatagcgtgatgttcgacatgcttttt
gtgaaattgtgtcatccactctctgtatgcataagtattcttgacgaaaagtgtaaacgg
ttgacagacaaagaacgagtcgaggttaaggagagaatcgagcctgaaaaaagggctaaa
tgcagtggtggaatgaatggttatttatccccatgtgctggagatcctcgcccacctatt
ttcaggtctcctgtagcagggatggaagatattattgaaaaccaagtcacatgtgctata
tacagactcccagatgcgcatgatcacatcactcgaccgcttgctggggttaaattccca
aagaagactgtgaatttgggggatctacaacctgaacccgttttgtggcatgaagattct
ggaaggaagccatgggagaatggaaggaagccatgggagaatggaaggaaaccatgggag
aatggaaggaagccatgggagaatggaaggcataactcctcgggagccatttctggccga
cagctcggggatgcagctcatcgacttgtcgttaatagcttacaagcgaaggtagatcct
aatgggtacggcaatcaaatgcataacccaccaccatcttaccctgtgcctccttaccac
ccaccgctggcttcctatcaaaatgatagaggtcacgatcaggtgtataatagaataccg
ccatcaagaacatttcaacctcctcgaggtcaccatcaatcttcaaattcaaattccccc
accgctctagtttaccatgaggatgggtataatccaccatatgtttcatccgcagcccac
caatccagcaatgggtctcatcctcaaaattatgaccgaaataatcgaccagttacccac
agtaaaggagagtattccaggaatgtaaactatccatcagcaggacttcatcagaatggc
ggaccaatgtatgctggcaggcagatggcacaacctccaaatgtggttcatgctcagtct
taccaagtcggttacaacccttatcaaaactaccaaccacccggagcttctcatcagcag
cggggtaattgggctccaatggcaaaccagagcattcgtggtgggtatggtcgcccgcaa
caaccaggcaaccaatattctgcgttagatagaagggcgaataaggggccacccccaccg
cctgggtttgggcgcaagtag
DBGET
integrated database retrieval system
