Alnus glutinosa (common alder): 133872456
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Entry
133872456 CDS
T10577
Name
(RefSeq) polyadenylation and cleavage factor homolog 4 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
aglu Alnus glutinosa (common alder)
Pathway
aglu03015
mRNA surveillance pathway
Brite
Transcription machinery [BR:
aglu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
133872456
Messenger RNA biogenesis [BR:
aglu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
133872456
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
133872456
NCBI-ProteinID:
XP_062165944
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Position
7:2028909..2037127
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AA seq
1073 aa
AA seq
DB search
MGMEMESSRRSFDRSREPGLKKPRLTEELDRGPNQNPIGRPFVRPVVVHPVRFRASDRDS
EGSDRGGYQPQPPQHQELLSQYQTALAELTFNSKPIITNLTIIAGENLVAAKAIAAIVCA
NILEVPSEQKLPSLYLLDSIVKNIGGDYIKYFAARLPEVFCKAYRQVDSSVHPSMRHLFG
TWKGVFPLQALQMIEKELGFTPIVNGSSSAATTTSKPDSHSQRPPHSIHVNPKYLERQRL
QQSSRGVQRPSVDAPSELVHEKNIGSPYGDYEYGSDLSRNSGSGARRTGGRIEQGHDKPL
YGTGVSVAETVSSQKNGINIKHGFPNYRAPKPAYADAHLKPTQNIANRSGSARSSNWKNS
EEEEFMWDDVNSRLTDQHASSVSNDSSKDHWTTDDSEKLGFEYHLRKPHSLADVGSKVNK
EASSDLLYNEPKESTPFGHRMSPSWTLQESHSIDGVIRNSGHSEGYATTLSGSSTSVASS
LSRMGGRLQMRPSHVGASGFGVVTNAVLGSSGTVGQQRFQSLGAASPSAQSPMRQYPSSP
LLAVQPSHHQSQSLAEQDHPLTQSLPRPDLKASQFSGRLNAGPLNQYTQDSSPIEPPIIQ
LGLLQKLQPRVVRASSPSVPSFQPRHHDQQQTDSAQAQPSGEILKPILPPVSNFVTPSTM
GNSASDHSDTLAAESSGQSSTSSLLAAVMKSGIFSSNSITASLPNLSVQDMGQVPSQSGI
QPPLPSGPPPTQFTSSGPSIVSTTSLSSSHNNSPAPANLSQGKVEPPLPPGPPPSSLAGS
ASTQPSSAVNDASNPISNLLSSLVAKGLISASKTEPPTPVPTHIPNQSQNKSLGITTTSS
VSVSSVPDSSETPVSIARDEVSLPGPANESSVALPQSTAVEIENLIGFKFKPDVIREFHP
SVISALFDDLPYPCSVCGLRLQLQEHLDRHLEWHALRNPEPNGLISGSRRWYANSCDWVA
GKPGLTSGVVSAGVADESSKTMVESEPMVPADESQCACVLCGEVFEDFYSQERDEWMFKG
AAYVTMPSRDGEIGTSNDSAAKGPVVHANCMSESSSHDLGVARGIKMVRLNVQ
NT seq
3222 nt
NT seq
+upstream
nt +downstream
nt
atgggaatggaaatggagagctcgcgtagatccttcgacagatcgagagaaccgggcttg
aagaagcctcgattgactgaggagctcgaccgtggtccaaaccagaacccgatcggacgg
ccttttgtgagaccggtggttgtgcatccggtgaggttccgagcgagtgatagggattcg
gagggcagcgaccgcgggggatatcagccgcagccgccgcagcatcaggaactattgagc
cagtatcagaccgcgctcgctgagctcacgttcaattcaaagccgattatcactaacttg
actataatcgccggtgagaacctcgttgcagcgaaggcgattgctgcaattgtctgtgcc
aacattctcgaggttcctagtgagcaaaagctgccttcgctctatcttttagacagtatc
gtaaagaatattggtggggattacataaaatactttgctgccagactacctgaggttttc
tgcaaggcatataggcaagtagactcttctgttcatccaagtatgcggcatctttttgga
acttggaaaggagtcttccctcttcaggcacttcagatgattgagaaagaacttggcttc
actcccatcgtcaatggttcatcttcggcagctacaacaacatctaaaccagattctcat
tctcaacgcccaccgcatagcattcatgtaaatcccaagtatttagaaaggcagcgcctt
cagcagtccagcaggggtgttcagcgtcctagtgtagatgcaccaagtgaacttgttcat
gagaagaatattggttctccatatggagactatgaatatggttctgatctttcaaggaat
tcaggttcgggagctcgaagaactggtgggagaattgagcaagggcatgacaaacctttg
tatggaactggagtcagtgttgcagagacagtatctagccaaaagaatggtatcaatatc
aaacatggatttccaaattaccgagcacccaaacctgcatatgctgatgctcatctaaag
ccaacacagaatattgcaaataggagtggcagtgcgaggtctagtaactggaagaattcg
gaggaagaggagttcatgtgggatgatgtgaactccagattaacggatcagcatgcatcc
agtgtctctaatgactcaagcaaagatcattggactactgatgattcagaaaagctgggg
ttcgaataccaccttcgaaaaccacatagtttagctgatgttgggtcaaaggtcaataag
gaagcttccagcgatttgctatacaacgaaccaaaagagtcaaccccttttgggcaccgg
atgtcaccatcttggacattgcaagaatcacattccattgatggggtgatccgtaattca
ggccattcagaaggctatgccaccactctcagcgggtcatcgacaagtgttgcttcttcg
ctatcaaggatgggaggtcgactgcagatgcggccatcacatgttggagcgtcaggcttt
ggggttgtaacaaatgctgtattggggtcctctggaactgtagggcagcaacggtttcag
tctctgggagcagcatcaccatctgcacagtcacccatgcgccagtatccttcgtcacct
ttgttagcagtgcaaccttcccatcatcaatcacaaagtttggctgagcaggaccatcca
ctgactcagtcactgcctcggcctgatttaaaagcttcacaattttcagggcggttgaac
gcggggcctctcaaccaatatactcaggactcctcacctattgagcctcctattattcag
ctgggactcttgcaaaagttgcagcctcgggttgtacgagcttcatctccttcagtgcct
tcttttcaaccaaggcaccatgaccagcaacaaactgactctgcacaggctcaaccttct
ggtgagattctaaagcccatcctgcctcctgtctcaaattttgtaactccctcaacaatg
gggaattctgcatcagaccattcagatactcttgctgcagaatcttcaggacaatcaagc
acatctagtttgttggctgctgttatgaagagtggaattttctctagcaattcaattact
gctagcctacctaatctgagtgtccaggacatggggcaagttccatcacagtcaggtatt
cagcctcccctgccaagtgggcctccgccaacgcagtttacgtcctcagggcccagtatt
gtgtcaacaacttcattaagttcttcccataataactcaccagctccggcaaatctatct
caaggaaaggtagaaccgcctctgccacctggtccaccaccttcatctcttgcaggtagt
gcatccacacaaccctcaagcgctgtgaatgatgcctcgaatccaatttcaaaccttttg
agctcattagttgcaaagggtttgatatcggcatcaaagaccgagccaccgactcctgtg
ccaactcatataccaaatcagtcgcaaaacaagagcctgggtattactaccactagctct
gtatcagtttcttctgttcccgattcctcagaaacccctgtttcaattgctagggatgag
gtatctttaccaggacctgccaatgaaagctctgttgcgttacctcaatccaccgcagtg
gaaatagaaaacctcataggtttcaagtttaagccagatgtcatccgagaatttcatcca
tctgtgatcagcgcactatttgatgaccttccatatccatgcagtgtttgtggtcttcga
cttcagcttcaagagcatcttgatagacacttggagtggcatgctcttagaaatcctgaa
cctaatggtttaattagtggatcaaggagatggtatgcaaactcatgtgactgggttgct
gggaagccaggacttacatctggggttgtgtctgctggtgtggcagacgagtctagtaag
acaatggttgagagtgagccgatggttcctgcagatgagagtcaatgtgcatgtgttttg
tgtggggaggtttttgaagatttttacagtcaagaacgggatgaatggatgttcaaagga
gcagcctacgtgactatgccatctagggatggtgagataggaacttcaaatgacagtgct
gccaagggtcccgttgtgcatgcaaattgtatgtcagaaagttcaagtcatgacttggga
gtggctagaggtatcaaaatggtaaggctcaatgttcaataa
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