Alnus glutinosa (common alder): 133872546
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Entry
133872546 CDS
T10577
Name
(RefSeq) uncharacterized protein LOC133872546
KO
K12830
splicing factor 3B subunit 3
Organism
aglu Alnus glutinosa (common alder)
Pathway
aglu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133872546
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aglu03021
]
133872546
03041 Spliceosome [BR:
aglu03041
]
133872546
03036 Chromosome and associated proteins [BR:
aglu03036
]
133872546
Transcription machinery [BR:
aglu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
133872546
Spliceosome [BR:
aglu03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
133872546
Complex B
133872546
Complex C
U2 SnRNP specific factors
133872546
Chromosome and associated proteins [BR:
aglu03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
133872546
TFTC complex
133872546
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
CPSF_A
Beta-prop_RSE1_2nd
Motif
Other DBs
NCBI-GeneID:
133872546
NCBI-ProteinID:
XP_062166084
LinkDB
All DBs
Position
7:complement(8640100..8669544)
Genome browser
AA seq
1369 aa
AA seq
DB search
MAVSEEECSSAKSRSSSSASSSSTHYLAKCVLRGSVVLQVLYGHIRSPTFLDVVFGKETS
IELVIIGEDGSVQSVCEQPVFGTIKDIAILPWNEKFHVRNPQMLGKDLVVVISDSGNLSF
LTFCNEMHRFLPLTHVQLSNPGNSRHQPGRMLAVDSSGCFIAASAYEDRLALFSVSMYND
TDIIDKRIIYPPENEGDASVSRSIQKNSIRGTIWSACFISQDSCQPSKGHNPVLAILLNR
RGADGNVLLLLGWNIRECAISVISEYTEPGPLAHNIVEVPHCNGFAFMFRVGDALLMDLR
DPHNPCCQSRTSLNFLPIAVDEHDFVEESCRVHDVDDEGLFNVAACALLELRRDYDPMCI
DGESANVGSACKHVCSWSWEPEHHKNPRMIFCVDSGEFFMIEISFDSDGPKVNLSECLYK
GLPCKELLWVQGRYLIAVVEMGDGMVLTLENGRLHYTSTIQNIAPILDMSVVDYHDEKHD
QMFACCGVAPEGSLRIIRSGISVEKLLKTAPIYQGITGTWTVRMKVIDSYHSFLVLSFVE
ETRVLSVGLSFTDVTDSIGFQPDVCTLACGLVSDGLLVQIHQNAVRLCLPTKVAHSEGIP
LSYPVFTSWFPDNMSISLGAVGHNMVVVSTSNPCILFILGIRFLSAYNYEIYEMQRLSRE
NELSCISIPQKHFEQKQSSSSINLINNSRVDAYPVGLDIGKTFVIGTHRPSVEILSFIPN
KGLRVLALGMISLTNTMGTAISGCIPQDVRLVSVDRLYILSGLRNGMLLRFEWPDASKVS
SSENTYAALSGVPTSCSPRLCEANLLKTGDLAVNLQLIAIRRIGITPVFLVPLSDSLDAD
LIALSDRPWLLHTARHSLSYTSISFQPSTHVTPVCSVECPKGVLFVAENSLHLAEMVHSK
RLNVQKFHLGGTPRKVLYHSESRLLLVMRTELSNDMYSSDICCVDPLSGSVLSSFKLELG
ETAKSMDLVRVGSEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCFEHVQNSDSGSITF
CSKAGSASQRTSPFCEVVGYATEQLSSSSLCSSPDDTSCDGVKLEETEAWQLRLAYSTTW
QGMVLAICPYLDRYFLASAGNSFFVCGFPSDNPQRMKRFAGGRTRFMITSLTSYFTRIAV
GDCRDGILFYSYHEDSKKLEHLYSDPSQRLVADCILMDVDTAVVSDRKGSIAVLSSSDRL
ENNGSPECNLTLSSAYYMGDIAMSIRKGSYLYKLPTDDVLNGIDLSHNTIIAGTLLGSII
IFIPISREEHELLEAVQARLVVYSLTAPVLGNDHNDFRSRENPVGVPKILDGDMLTQFLE
LTSLQQEDILSLPLGLLDTVKSTSKPHLSSAIPVNQVVQLLERVHYALN
NT seq
4110 nt
NT seq
+upstream
nt +downstream
nt
atggcggtttcagaggaagagtgttcctccgccaagtcccgatcgtcttcgtccgcgtct
agcagcagcactcactacctcgcaaagtgcgtcctccgaggaagcgtcgtcctccaggtc
ctctacggtcacatccgctccccaaccttcctcgacgtcgttttcggcaaggagacatcc
atagagttggtaatcattggtgaagatggaagtgtacaatctgtatgtgagcagcctgta
tttggcacaattaaagatattgccatcctaccctggaatgagaagttccacgtacgaaac
ccacagatgctgggtaaagaccttgtggttgttatttctgattcggggaacctctcattt
ctcacattttgcaatgaaatgcacaggtttctcccgctaacacatgttcaactttccaat
cctggaaactcaaggcatcagcctggaagaatgttggctgttgattccagtggctgtttc
attgctgctagtgcatatgaagatcggttggctctgttttccgtttcaatgtataatgac
actgatatcattgataagagaataatttaccctcctgaaaatgaaggggatgcaagtgtt
tccagaagcatccagaaaaacagtatacggggtaccatatggagcgcatgctttatttca
caagattcctgtcaaccaagtaaggggcataatcctgtactagccattcttctaaatagg
cggggagcagatgggaatgtacttctgttattgggatggaatatcagagaatgtgctata
tctgttatctctgagtatacggaacctggacccttggcgcataatattgttgaagttcca
cactgtaatgggtttgcctttatgttcagggttggtgatgctctcttaatggatcttaga
gatccgcacaatccctgctgtcaatctcgaacaagcttaaattttttacctattgcggtt
gatgagcatgattttgttgaggaatcgtgtagagtacatgatgttgatgatgaaggttta
tttaatgttgctgcatgtgctttgctggagttgaggagggattatgatcctatgtgtata
gatggtgagagtgcaaatgtgggttcagcctgcaaacatgtatgctcgtggagttgggaa
ccagaacatcataaaaatccaaggatgattttttgtgtggatagtggagaattttttatg
attgaaatttcgtttgattctgatggccctaaagttaatctatcagaatgcctttataaa
ggtctaccatgcaaggaacttttgtgggttcaaggcagatatctgattgcagttgtggag
atgggggatgggatggtcctcacactggagaatggaagactgcattacacaagtactatt
caaaacattgcaccaatattagatatgtcagttgtggattaccatgatgagaaacatgat
caaatgtttgcctgctgtggagtggcaccagagggatcgttaaggattattcgcagtggt
attagtgtagaaaaattgttgaagactgctcctatttatcaaggcataactggtacttgg
acagttcgaatgaaagtaattgattcttatcattcttttcttgtgctatcatttgttgaa
gagaccagggtactatcggttggcttaagttttactgatgtgactgattcaattggtttc
cagcctgatgtctgtactttagcatgtggccttgtaagtgatggtttgcttgtccagatt
caccaaaatgctgtcaggctttgtttacctaccaaggttgctcattctgagggcatccct
ttgtcctatccagttttcacatcttggttcccagacaatatgagtattagtttgggggca
gttggacataatatggtggttgtttctacctctaatccatgcattttatttatccttggg
atcagatttctatcagcttataattacgaaatatatgaaatgcaacgtctgagtcgggaa
aatgaattatcatgcatttcaatacctcaaaaacattttgagcaaaaacaatcaagttct
tccatcaatctgataaataatagccgtgtggatgcctatccagttggacttgacattggt
aaaacctttgttattgggacacataggccttcagtagaaatcttgtcctttataccgaat
aaaggcttacgagtccttgctttagggatgatttcattaacaaataccatgggaactgct
ataagtggctgcattcctcaagatgtaaggcttgtatcagttgataggctttatatactc
tctggtttgaggaatggaatgctgctccggttcgagtggcctgatgcctccaaagtgtct
tcatcagaaaatacatatgctgccttatcaggagtgccaacttcttgtagcccacgtctg
tgcgaggctaatctattgaagacaggcgacttagctgttaatcttcagttgattgccatt
cgtcgcattggcatcactcctgttttcctcgttccactgagtgattcacttgatgcagat
ttaattgctcttagtgacagaccttggttgttgcatactgcaaggcacagcctctcttat
acatccatctcatttcaaccttcaacacatgtgacccctgtatgttctgtggaatgtcca
aaaggagtcttatttgttgcagagaacagtctacatttggcggagatggtgcatagtaag
aggctgaatgtgcagaaatttcatcttggaggcactccacggaaggtcttatatcatagt
gaaagcaggctattacttgtaatgagaactgaattgagcaatgatatgtattcatccgac
atatgttgtgtggatccccttagtgggtcggtcctatcatcttttaaacttgaacttgga
gaaacagcaaaatccatggacttggtgagggttggaagtgaacaggtcctggtggttggg
actagtctgtcttccggtccagccataatgcctagtggtgaagctgagagtaccaagggc
cgtcttattgtcctctgctttgaacatgtgcaaaattcagatagtggttcaataacattc
tgttcaaaggcagggtcagcttctcaacgaacttcaccattttgtgaagttgttgggtat
gccacagaacagctatcaagcagcagtctctgcagcagcccagatgatactagctgtgat
ggagtcaaacttgaagagactgaagcatggcaattgcgcttagcttattcaactacatgg
cagggaatggtccttgcaatatgtccttatcttgatcgttacttcttggcatctgccggt
aatagtttttttgtatgcggttttccaagtgacaatcctcaaaggatgaaacggtttgct
ggaggaaggacacgatttatgataacatctttgacttcatattttactagaattgctgtt
ggtgattgccgtgatggtatccttttctattcttaccatgaggattccaaaaaactggag
catctgtattctgacccatcacagaggttagttgctgattgtatccttatggatgttgac
actgctgttgtttcggatcgtaaaggaagcattgcggttctgtcatcttcagatcgttta
gaaaataatggaagtccagaatgcaacttgactcttagctctgcttattatatgggtgac
atagcaatgagcatcaggaaggggtcatatttatataaacttccaactgatgacgtgctg
aatggtattgacttgtcacacaacactatcatcgccggtacactattaggaagcattata
atctttattcccatatcaagggaagaacatgagctcttagaagcagtccaagctagactt
gtggtttattcattgactgctccagttctaggaaatgatcataatgacttccgtagccgt
gaaaacccggttggggtacctaaaatactcgatggtgacatgctgactcagttcttggag
cttacaagtttgcagcaagaggacatattgtcgttacctcttggtttattggatactgta
aaatcaacctccaaaccacatttatcttcagctatccctgtaaatcaggtggtgcaactc
cttgaacgagttcattatgcattgaactaa
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integrated database retrieval system
