Alnus glutinosa (common alder): 133872795
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Entry
133872795 CDS
T10577
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
aglu Alnus glutinosa (common alder)
Pathway
aglu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133872795
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aglu03019
]
133872795
03012 Translation factors [BR:
aglu03012
]
133872795
Enzymes [BR:
aglu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
133872795
Messenger RNA biogenesis [BR:
aglu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
133872795
Translation factors [BR:
aglu03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
133872795
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
nSTAND3
AAA_19
BEX
Motif
Other DBs
NCBI-GeneID:
133872795
NCBI-ProteinID:
XP_062166385
LinkDB
All DBs
Position
7:9682852..9697312
Genome browser
AA seq
998 aa
AA seq
DB search
MSQRPNFQGGRRGGPNAGGRGGGRRGGGGGGGRGGGRGEQRWWDPVWRAERLRQKQSEME
VLDDNEWWSKMEQMKRGGEQEMVIKRNYSRADQQTLSDMAYQLGLYFHAYDKGKALVVSK
VPLPDYRADLDERHGSTQNEIRMSSDIERRVGSLLNSSESQGAVPVNDSSITPIQRGKKS
TAGSNIRKPDSLLDIDSAKEKLSLELKQRQENMKASDSLRAIQSFREKLPAFKVRSEFLK
AVAENQVLVVSGETGCGKTTQLPLFILEDEISSLRGADCCIMCTQPRRISAISVAARIAS
EKGESLGETVGYQIRLEAKRSAQTRLLFCTTGVLLRQLVQDPELTGVSHLLVDEIHERGM
NEDFLLIILRDLLPRRPDLRLILMSATINADLFSKYFGNAPTIHIPGLTFPVAEFFLEDV
LEKTRYNIKSEFDNFEGNSRRRRRQQDSKKDLLTELFEDVDIDSHYKNYSISTRKSLEAW
SGSQLDLGLVEAKIEYICRHEGDGAILVFLTGWDEISKLLDKLKGNNFLGDPSKFLVLPL
HGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVIDSGKAKETSYDALNKLA
CLLPSWISKASAHQRRGRAGRVQPGICYRLYPKMIHDAMLQYQLPEILRTPLQELCLHIK
SLQLGTVGSFLAKALQPPDALAVQNAIELLKTIGALDEMEELTPLGRHLCTLPLDPNIGK
MLLMGSIFQCLNPALTIATALAHRDPFVLPINRKEEADAAKRSFAGDSCSDHIALLKAFE
GWKDAKRNGRERAFCWDSFLSPVTLQMMDDMRMQFLDLLSDIGFVDKSRGANAYNQYSHD
LEMVCAILCAGLYPNVVQCKRRGKRSAFYTKEVGKVDIHPASVNAGVHLFPLPYMVYSEK
VKTTGIYIRDSTNISDFALLLFGGNLTPSKSGEGIEMLGGYLHFSASKSVLELIRKLRGE
LDKLLNRKIEEPGLDISMEGKGVVAAVVELLHSHNLRY
NT seq
2997 nt
NT seq
+upstream
nt +downstream
nt
atgtctcaacggcccaactttcaaggcggtcgccggggcggccccaacgccggaggacgc
ggtggtggccgccgaggcggcggtggcggtggaggccgcggtgggggacgcggcgagcaa
cggtggtgggacccggtctggcgagcggagcgactgagacagaaacaatcagagatggaa
gttcttgacgataacgagtggtggagtaagatggagcagatgaaaaggggaggggaacag
gagatggtaattaagcgtaattacagtcgtgcggaccagcaaaccctatctgatatggct
tatcagctggggctttacttccatgcatacgataaagggaaggctcttgttgtcagcaag
gttccattgccagattaccgggcagatcttgatgaacgccatggatccacacagaatgag
attcgaatgtcctcagatattgagcggagagttggtagtcttttgaatagctcagagtca
cagggggcagtgcctgtcaatgattcttctatcacacctattcagagaggcaaaaaatca
acagctggtagtaatataagaaaacctgattccttgttggacattgattctgctaaggag
aaacttagtcttgaacttaagcaaaggcaggaaaacatgaaggcaagtgattctttaagg
gcaatacagtcattcagggaaaagcttcctgcattcaaagtgagatctgagtttctgaaa
gctgttgcagaaaaccaggtattggtagtttcgggggagacaggttgtggcaaaacaact
cagctccctctgtttattctagaagacgaaatatcctctctgcgcggtgctgattgctgc
ataatgtgcactcaaccccgccgaatatcagctatatctgttgctgctcgtattgcttct
gaaaagggggagagtctcggcgaaactgttggttatcagatccgcctggaagcaaagcgc
tctgctcaaacacggttgctattttgtaccactggagtattactccgacagttggttcag
gacccagagttaacaggggtgagccatctgctagtggatgaaatccatgaaagaggcatg
aatgaagactttttactaataattctgcgtgatcttcttcctcgccgtccagatttacgt
cttattctaatgagtgctaccatcaatgctgacttgttctccaaatattttggaaatgcc
ccaactatacatataccgggattgactttccctgttgctgagttttttctagaggacgtg
ctggagaaaactcgttataatatcaagtcggagtttgacaattttgaggggaattcaagg
agaagaaggagacaacaagactctaagaaagatcttttaacggaattatttgaggatgtt
gatattgattctcactacaaaaattatagtatatctacaagaaagtctcttgaagcttgg
tctggttcacaacttgatttgggcctggtggaggcgaaaattgaatatatatgtcgccat
gaaggtgatggagctattcttgtattccttacgggctgggatgagatttctaagctactt
gacaaacttaaaggaaacaacttccttggcgatcccagcaagtttctggtccttccccta
catggttcaatgcccaccatcaatcaacgtgagatatttgatcgccctccccctaacaag
aggaaaattgtgctggcaacaaatattgcagagagtagtatcactatagatgatgttgtg
tatgtcatagacagtggaaaggcaaaggaaactagttatgatgccctgaacaaactggct
tgtctattaccatcgtggatttctaaggcttccgcacatcagagacgaggtcgtgctggc
cgtgtgcaacctggaatttgttatagactgtatccaaaaatgatccacgatgcaatgctt
cagtatcagttacctgagattctaagaacacctttgcaagagctatgcctgcatatcaaa
agtttgcagcttggaactgttggatcatttttggccaaagcacttcagccaccagatgct
cttgccgttcaaaatgcgattgaacttcttaaaacaattggagctttagatgagatggag
gagcttactccacttggtcgccatctttgcactctaccattggacccaaatattgggaag
atgcttcttatggggtctatctttcaatgcctcaatcctgccttaacaattgccacagct
cttgcgcatcgtgacccttttgtcctaccaataaataggaaagaggaagctgatgcagca
aaaagatcctttgctggtgattcttgcagtgaccacatagcacttcttaaagcctttgaa
ggatggaaagatgcaaaacgaaatggaagggaaagagcattctgttgggatagcttttta
tccccagtaaccttgcagatgatggacgatatgagaatgcagtttctagatctattatca
gacattggctttgtagacaaatcaaggggtgctaatgcttacaaccagtacagccatgat
ttggagatggtctgtgcaatcctttgtgctggactatacccaaatgttgtgcagtgcaaa
agaagaggaaagcgatcagcattctacactaaagaagttgggaaagttgacatccatcct
gcttctgtcaatgcaggggttcatctcttccctctgccttacatggtttacagtgaaaag
gtgaaaacaactggcatctacatccgagactctacaaatatatcagactttgctctactt
ctatttggtggtaatctcacccctagcaaatccggggagggcattgagatgcttggtggt
taccttcatttctctgcatcaaagagcgttttagagctaatacggaaattgcgtggggaa
cttgataagcttttaaataggaagattgaggaaccggggttggacatttctatggaggga
aaaggagtggttgctgctgtggttgagttattgcacagccataatttacgttactaa
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