Alnus glutinosa (common alder): 133872976
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Entry
133872976 CDS
T10577
Name
(RefSeq) uncharacterized protein LOC133872976
KO
K06100
symplekin
Organism
aglu Alnus glutinosa (common alder)
Pathway
aglu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
133872976
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aglu03021
]
133872976
03019 Messenger RNA biogenesis [BR:
aglu03019
]
133872976
Transcription machinery [BR:
aglu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
133872976
Messenger RNA biogenesis [BR:
aglu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
133872976
U7-dependent histone pre-mRNA processing factors
133872976
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_EZ
DUF2031
HEAT_2
mTOR_dom
Motif
Other DBs
NCBI-GeneID:
133872976
NCBI-ProteinID:
XP_062166657
LinkDB
All DBs
Position
7:27673253..27700587
Genome browser
AA seq
1343 aa
AA seq
DB search
MVAVMMATNTRENLASLVNSVKSASDIPSKLEPLRQLKQDLLQQDHALFSEFLPLIFDLQ
SDRFSPVRKHVAEIIGEIGLKHVEFLPEIVPELINVLSDGTPAVARQAIASGIELFRLTL
EKVTIQGLYSSELDSSLESSWEWMLKFKDEIYSVAFQHGSGGTRLLALKFVEAVILLYTP
DPNGSPEPPPYEGKFVQFNISWIRAGHPLLNVGDLSIEATQSLGLLLDQLRFPTVKSLSN
AETIVLINSLSAIAKQRPAFYGRILPVLLGLEPSSSVINGMHVSAAHHALKNAFLTCLKC
THPGAAPWRDRLVGALGEIKPGGLAEQDLQQGCKTNGSLGEGKEDSPVIKEEKPTIKACD
AVDSNLGRKRSGSPDSSDLAEDEDVPEKRARPSPSVSEESTRELDKKITMPRDDVPSARP
NTSRGDGDSGPVQQLVAMFGALVAQGEKAVGSLEILISSISADLLAEVVMANMRYLPPNR
FKAEQDEDSLLNMTIAGSDTQAKYPPSFVANVLSLSSTFPPIASLLDAQQSASSDIVKPH
GEEEGVVAVLACVGMDHESDNAISPTGLLASSDVVSSGMEKGCSPIPSDIHDVGNLESEI
PGLDSSAHADGLSETLVASSLASTDLEEASQEQVTSLGQSSLSLLPSMSTDRSEELSPKA
AVTDVTSLVSSTATSVGLSSHFVLPKMAAPVVYLDDEQKDHLQKLAFMRIVEAYKQVAVA
GGAQVRFSLLANLGVEFPSELDPWILLQTHILEDYMGHEGHELTLRVLYRLYGEQVEDRD
FFSSTTAASEYEKFLLTVAETLRDSFPPSDKSLSRLLDEAPDLPKSVLKLLESLCSPGNC
DKADELQSGDRVTQGLSAVWRLIMLRPLIRDVCLKIALQSAVHHLEEVRMKAIRLVANKL
YPLSSIAKQIEDFAKEMLLSVISDDATERTDSEGPVSESQKFSDLEKPVDEHLSISANSK
DISSDTHQSSTCQTVSSLSVSEAQRHMSLYFALCTKKHSLFRQIFDSYKSMSKTVKQTVH
RQIPVLVRTMGSSSDLLEIISDPPSGSKNLLMQVLHTLTDGTIPSSELLFTVRKLYDSKV
KDLEILIPILPFLSKDEVKLIFPHVVNLPPDKFQAALARILQGSSHSGPVLTPAEVLIAI
HAIDTDRDGIPLKKVTDACNACFEQRQIFTQQVLAKVLNQLVEQIPLPLLFMRTVLQAIG
AFPGLEDFIMEILSRLVSKEIWKYPKLWVGFLKCALLTKPQSFSVLLKLPPAQLENALTR
TGALKAPLIAHASQPNIRSSLPRSVLVVLGIAPDSQTSSQAQTGVAPDSQNSSQVQTSEA
QTGLTSNSDNVVTEKSKESSGAT
NT seq
4032 nt
NT seq
+upstream
nt +downstream
nt
atggtggcagtgatgatggccaccaacacgagggaaaatctcgcaagtttggtaaactcg
gtcaagtcggcctcggatataccgtctaagctcgaacccttgcgccaattgaagcaagat
ttgctccaacaagatcatgccttgttctcggagttcctccctctcattttcgacctccag
tctgaccggttcagcccggttcgcaagcatgttgccgagattattggtgaaattggactt
aagcatgtggaattcttacctgaaattgtgcctgagttgattaatgttttgagtgacggt
acaccggctgttgctcgacaagccatcgctagtgggatcgaattgtttcgtttgactctt
gaaaaagttacaattcagggtctatattcaagtgagttggacagttcacttgagtcatca
tgggagtggatgttaaaattcaaggacgaaatatactcggtagcttttcagcatggaagc
ggtgggacaaggttactggcactgaagtttgttgaagcagtcattcttctttacacaccc
gatcctaatggctctccagagccccctccttatgaaggaaagtttgtgcaatttaatata
tcttggatacgtgcgggccaccctttgcttaatgttggagatttgtcaattgaggccact
cagagtttgggtctattgcttgatcaactcaggttcccgacagtgaaatctcttagtaat
gcagaaaccattgtgctcattaatagtctttcggcaattgcaaaacaaaggcctgcattc
tatggacgaattctgccagttttacttggtttggaaccctcgagctctgtgatcaatgga
atgcatgtttctgctgcacatcatgctttgaaaaacgccttcctcacctgcttgaaatgt
acacacccgggtgctgctccgtggcgggatcgtttggttggtgccttgggggagattaaa
cctggagggttggcggaacaagatcttcaacaaggttgcaagactaatggaagtctaggc
gaagggaaagaagattcaccagttattaaggaagagaaacccacaattaaagcgtgtgat
gctgtggacagtaatttggggagaaaaagatctggatcaccggacagtagtgatctggcc
gaagatgaagatgtgcctgaaaaacgagcaagaccatcgcctagtgtctcagaggaatcg
actagagagttggataagaaaatcacaatgcctcgggatgacgttccttcagctcgtcca
aacacttccagaggagatggtgattctggacctgtgcagcagcttgttgctatgtttggt
gcgttggttgcgcaaggtgaaaaagctgttggctctttggagattcttatctcaagtatc
tctgccgacttgctagctgaggtagtgatggctaatatgcgttacctgcctcccaatcgt
ttcaaagctgaacaagatgaagattcgctgctgaacatgactatagctggcagtgatact
caagctaaatatcctccatcatttgtagcaaatgttctgtcactttctagtactttccca
ccaatagcctcactgttagatgctcaacaatctgcatccagtgatatagtgaaacctcat
ggcgaggaagaaggtgttgtggctgttcttgcatgtgttggcatggaccatgaatctgat
aatgcaatttcgcccactggtttactagcttcttctgatgttgtttcgtctggaatggag
aaaggctgctctcctattccatctgatatccatgatgtggggaatctagagagcgagata
cctggcctggattcttctgcgcatgctgatggattgtcagagacattggttgcttcctct
ttggcatccactgatttagaagaagccagtcaagagcaagttacaagtttaggtcagtca
tcactgagtttacttccatcaatgtctacagacaggtctgaggagcttagcccaaaagca
gctgttacagatgtcactagcctggtctcgtcaacggcaacttctgttgggttgtcttct
cattttgtcttgcccaagatggcagcacctgttgtttaccttgatgatgaacagaaggat
catttgcagaaattggcttttatgcgtattgttgaggcatataagcaagtagcagttgct
ggaggtgcacaagtccgcttttcacttcttgcaaatttaggggttgagtttccctcagag
ttggacccctggatactgttacagacgcatatattggaagattatatgggtcacgagggg
cacgagttgacattgcgtgtcctctacaggttatatggtgagcaagtagaggaccgtgac
ttcttttcttctacaactgcagcttctgaatatgaaaaattccttcttactgtggcggaa
acacttcgagattcttttccaccttcagacaaatcattaagtagattgcttgatgaagct
cctgatctgccaaagtcggttttaaaattattagagtccctgtgttctccaggaaactgt
gacaaagctgacgagttgcaaagtggggatcgagttactcaaggtctcagtgccgtgtgg
agattgattatgctgaggcctctcattcgagatgtgtgcttgaaaattgctttacagagt
gcagtccatcacttggaggaagtgcgtatgaaggcaatacgtctggtggcaaacaagttg
taccctttatcatccattgctaaacaaattgaggattttgcaaaggaaatgttgctctct
gtaataagtgatgatgcaacagaaagaacagatagtgaaggaccggtctctgaatcacag
aagttttctgatctggaaaaacctgtggatgaacatctgtcaattagtgccaacagtaaa
gacatttcctctgatactcatcaatcgagcacgtgtcaaactgtgtcctccctttcagtc
tccgaggcccaacgacacatgtcactgtattttgccttgtgtaccaagaagcactccctt
tttcgccaaatatttgatagctataagagcatgtcaaagacagttaagcagacggttcat
cgccagatcccagtactagtccgtactatgggctcttcgtcagatcttcttgaaatcatt
tcagatcctccaagtggaagcaagaatctactaatgcaggttttgcatacactgacagat
gggacgattccctcttcagaattattatttaccgttaggaagttatatgattccaaagta
aaggatttagagattcttattccgatattaccattcctatcaaaggacgaggttaagctg
atttttccccatgttgtgaatcttccaccagataagttccaagccgcacttgctcgcata
ctacagggatcatctcattctggtccagtgctcactccagctgaagtgttaattgctatc
catgcgatcgatactgacagagatggaattcccttgaagaaggtcacagacgcatgcaat
gcttgttttgagcagaggcaaatattcacgcaacaagtgcttgcaaaggttttgaatcag
ttggttgagcagattcctcttcctttattgttcatgcggacagtgttacaagccataggt
gctttcccagggctggaggattttataatggagatcctgtctcgtcttgtgagcaaggag
atttggaaatacccaaagttgtgggtaggattcttgaagtgtgcactcctgacaaagcct
cagtcattcagcgtgttgcttaagctacctccagcacagctggaaaacgcattgactaga
actggagcactaaaagcacctttgattgctcatgctagccaaccgaacatccgatcttca
cttccaagatctgtcttggtggttctgggaattgcaccagattcacagacttcaagtcag
gcacaaacgggagttgccccagattctcagaattcgagtcaggtgcaaacaagtgaggct
cagactggacttacaagcaactcagataatgtggtgacagagaaatctaaagaatcatct
ggtgctacctga
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