Alnus glutinosa (common alder): 133873001
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Entry
133873001 CDS
T10577
Name
(RefSeq) polyadenylate-binding protein 7
KO
K13126
polyadenylate-binding protein
Organism
aglu Alnus glutinosa (common alder)
Pathway
aglu03015
mRNA surveillance pathway
aglu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
133873001
09123 Folding, sorting and degradation
03018 RNA degradation
133873001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aglu03019
]
133873001
03041 Spliceosome [BR:
aglu03041
]
133873001
Messenger RNA biogenesis [BR:
aglu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
133873001
mRNA cycle factors
Stress granule specific factors
133873001
Spliceosome [BR:
aglu03041
]
Complex C
Other components
Complex C specific factors
133873001
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RBD_DEAH11
RRM_occluded
RRM_7
RRM_RdRP1_2
Nup35_RRM_2
HOATZ-like
Motif
Other DBs
NCBI-GeneID:
133873001
NCBI-ProteinID:
XP_062166685
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All DBs
Position
7:1494714..1501281
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AA seq
626 aa
AA seq
DB search
MAVTPTVTASLYVGDLHPDMTDGQLVDAFSQFESLASVRVCRDMSTGRSLCYGYVNFITL
EDAIRAIEVKNHTTLNGNLIRVMWSRRDPDARRSGKGNVFVKNLNESIDNMGLQDMFQKF
GNILSCKVATSEDGKSKGYGFVQFESEESANDAIEKLNGSTFGEKQIYVGKFVKKSERIL
PSPDAKFTNLYVKNLGPDVTEEVLQEKFSKFGKIASLVIRKEDNGMSRGFGFVDFENSDD
ARQAMEAMNGSQLGSKVLYVARAQKKAEREQILRHQFEEKRKEQIMKFKGSNVYVKNIDD
NVTEEELREHFSQCGTITSAKLMKDNKGICKGFGFVCFSTPEEANKAVITFHGYMFHGKP
LYVTIAQRKEDRQAQLQLQYAQRMPGLVGHSATIIPSGYPPYYYPTPPGVVSQVPPRPSM
MYQPLGLRPGWGANGFAPPTRPGFQPSPVPVIPNNQRQNRGRMNGPMLPQGGAYSFSYIP
QSMTSSKESANQQWTGQAKYVPNSRQREMNKGSGVSSAASISVGSGPQGSEMLSSMLAAS
SPEHQKQILGERLYPLVQKQKPDLAAKITGMLLEMDNSELLLLLESPESLVAKVEEAVHV
LKFSKTKVSGQDTLHSSFLSAEVAVN
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgactccgacggtgacggcgtcgctgtacgtgggggacctccacccggacatg
acggacggccagctcgtggacgcattctcacagtttgaaagcctcgcgtcagtgcgcgtc
tgcagggacatgtccacggggaggtcgctctgctacggttacgtcaacttcatcactctc
gaagacgcaattcgtgctattgaagtaaagaatcacactaccctgaatggcaatttgata
agggtcatgtggtcacgtcgcgatcctgatgcaagaagaagtggtaaagggaatgtgttt
gttaagaacttgaatgaatcgatcgataatatggggcttcaagatatgtttcagaaattt
ggaaacattttgtcttgcaaagttgctacgtctgaggatgggaagagtaaagggtatggc
tttgttcaatttgagtctgaggaatctgcaaatgatgcaattgagaagctaaatggctcc
acttttggagaaaagcagatatatgttgggaagtttgtcaaaaagagcgaaaggatttta
cccagcccagatgctaaatttacaaatttgtatgtgaaaaatttgggtccagatgtcact
gaagaggttctgcaggaaaagttctccaagtttggaaaaattgctagcttggttatccga
aaggaagacaatgggatgtcaagaggttttggctttgtagactttgaaaactcagatgat
gcaagacaggcaatggaagcgatgaatggatcacaacttggctcaaaagttctatatgta
gcaagagcacagaagaaagcagagcgtgagcaaattttacgacatcaatttgaggagaaa
cgtaaagagcagatcatgaagttcaagggttcaaatgtctatgtgaagaacattgatgat
aatgtcactgaggaggagctgcgagaacacttcagtcagtgcggaacaattacttctgca
aaacttatgaaagataacaagggaatatgtaaggggtttggatttgtctgcttttccacc
cctgaggaggccaataaagctgtgatcacttttcatggatacatgtttcatgggaagcca
ctgtatgtgactattgctcaaaggaaagaggatagacaagcacaattgcagcttcagtat
gcacaacgcatgccaggactggtggggcattcagctactattatccccagtggatatcct
ccttactactacccgactccacctggtgttgtttcacaagtgcctcctcggccctccatg
atgtatcagcctctgggattgaggccaggatggggggctaatggatttgcacctccaacc
agaccagggtttcaaccatctccagttccagttattcctaataaccaaaggcaaaatagg
ggcaggatgaacgggcctatgctgccacagggtggtgcatactctttttcctacatacca
cagtcaatgacttcttcaaaagagtcagccaatcagcagtggactgggcaggctaagtat
gtgccaaacagccgtcaacgtgagatgaacaaaggatctggagtctcatctgctgcttct
atttctgttgggtccgggccacaggggtcagagatgctaagtagcatgcttgctgcttct
tcccctgagcatcagaagcagatactcggcgagcgtctgtaccctcttgtccaaaaacaa
aagcctgaccttgctgcaaagattacggggatgcttttggagatggataactcggaattg
ttgcttttgctggagtcaccagagtctctggtggccaaagtggaagaagctgtgcacgtt
ctcaagttctccaagaccaaagtatctggtcaagacacccttcattccagtttcctatct
gctgaggttgcagtcaattga
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