Alnus glutinosa (common alder): 133874186
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Entry
133874186 CDS
T10577
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
aglu Alnus glutinosa (common alder)
Pathway
aglu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133874186
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aglu03041
]
133874186
Spliceosome [BR:
aglu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
133874186
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40_Prp19
Beta-prop_THOC3
WD40
Beta-prop_WDR3_1st
Beta-prop_IFT122_1st
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
WD40_Gbeta
WD40_CDC20-Fz
EIF3I
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_2nd
WDR55
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR75_1st
ANAPC4_WD40
DSE1_N
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_Aladin
PRP4
Beta-prop_DCAF4
NBCH_WD40
Beta-prop_WDR19_1st
Beta-prop_WDR41
CFAP251_N
Beta-prop_EIPR1
Beta-prop_Vps41
Beta-prop_RIG_2nd
Beta-prop_SCAP
PAC11
ASA1
WD40_RFWD3
Beta-prop_NOL10_N
eIF2A
WD_LRWD1
Beta-prop_WDR75_2nd
WD40_like
Motif
Other DBs
NCBI-GeneID:
133874186
NCBI-ProteinID:
XP_062168021
LinkDB
All DBs
Position
7:complement(4798209..4808699)
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AA seq
574 aa
AA seq
DB search
MEVDEENPTSTSPAEASDLIPDSESVLPDVNTTPVQPIQPILPPVAVPPIAPIPTIPPPP
VPRPLAPLPIRPPVSRPPTTQNGEVRASDSDSDHDDSGPNQTTSGPTGEYEISEESRLVR
ERQEKAIQELMMKRRAKALAVPTNDMAVRTRLRKLGEPMTLFGEREMERRERLRTIMAKL
DAEGQLEKLMKAHEEEEAAASAAKADAEEDIVQYPFYTEGTKALLDARVQIAKYSLVRAA
LRIQRARRKRDDPDEDIDAEIDWALKQAETLALDCSEIGDDRPLSGCSFSQDGKLLATCS
LSGVAKLWSMPQVKKVCTLNGHTERATDVAFSPVCDHLATASADRTARLWNTEGSLLRTF
EGHLDRLARISFHPSGKYLGTASFDKTWRLWDVETGEELLLQEGHSRSVYGIAFHHDGSL
AASCGLDALARVWDLRTGRSILALEGHVKPVLGVSFSPNGYHLATGGEDNTCRIWDLRKK
KSLYTIPAHSNLISEVKFEAQEGYFLVTASYDMTAKIWSARDFKPVKTLAGHEAKVTSLD
VVGDGHSIATVSHDRTIKLWSSSSHEKEQAMDVD
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atggaggtcgacgaggaaaaccctacatctacttctcctgcagaggcttctgatttgatc
cctgatagtgaaagtgtgcttcctgatgtcaatactactccagtacagccaatccaacca
atacttccaccagtggctgtgcctcctattgctccaattccgacaattcctcctccccct
gtaccacgcccattggcacctctccccatccgccctcctgtttcgaggccgcccactacg
caaaatggtgaggtgagagcaagtgactcggattcagaccatgatgactcaggcccaaac
cagactacttcaggtccaactggggaatatgagatatcagaagagagcagactggtgaga
gagcggcaggaaaaagcaattcaggagcttatgatgaagcggcgtgctaaagctctggcg
gtgcctactaatgacatggctgtccggactcgtcttcgcaagcttggtgaaccaatgacc
ctttttggagaaagagagatggaaagacgtgagaggttgcggacaattatggcaaaactg
gatgctgaagggcagttggagaagctgatgaaagctcatgaagaggaagaggctgcagct
tctgcagcaaaagcagatgctgaggaagatattgttcagtaccccttttatacagaaggc
acgaaggctctcttggatgctagagttcagattgcaaaatactctcttgtgagggcagct
ttgcgtattcaacgtgcacggaggaaaagggatgatccagatgaagatattgatgcagag
attgattgggctctgaagcaggcagagactttggcgcttgattgcagtgagattggagat
gaccggccactttctggttgttcattctcacaggatggaaaacttctggctacctgctct
ttgagtggagttgctaagttgtggagtatgcctcaagttaaaaaggtttgtacattaaat
ggacacacagagcgtgctactgatgttgcattttctcctgtatgcgaccatctagctact
gcctctgctgaccgaactgcaaggttgtggaacactgaaggatctctcttgaggacattt
gagggccatctggaccgtcttgcacgaatttccttccatccatcagggaagtacctgggg
actgctagctttgacaagacatggagattatgggatgtagaaactggtgaggagttgctt
cttcaagaaggtcacagtaggagtgtctatgggatagccttccaccatgatggatcactg
gcagcatcttgtggactggatgcacttgctcgcgtttgggaccttcgaactggcagaagt
attcttgcattggaaggccatgtcaagccagttctgggagttagcttctctcctaatggc
taccatttagccactgggggtgaagacaatacttgtcgtatctgggatcttaggaagaaa
aaatctttgtatactataccagcgcattccaacctcatttcagaagtaaagtttgaggct
caggaaggatatttcttggtaactgcttcctatgatatgacagctaagatttggtcagcc
cgagattttaagcctgtgaagacactggctggacatgaagcaaaagtcacgtctttggat
gttgttggagatgggcattccatagcaaccgtatcacatgatcggacgatcaagctgtgg
tctagcagtagccatgagaaggaacaggctatggatgtggactag
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