Alnus glutinosa (common alder): 133874252
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Entry
133874252 CDS
T10577
Name
(RefSeq) transcription elongation factor SPT6 homolog isoform X1
KO
K11292
transcription elongation factor SPT6
Organism
aglu Alnus glutinosa (common alder)
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aglu03021
]
133874252
03036 Chromosome and associated proteins [BR:
aglu03036
]
133874252
Transcription machinery [BR:
aglu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
133874252
Chromosome and associated proteins [BR:
aglu03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
133874252
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
SPT6_acidic
Spt6_S1
Tex_central_region
HTH_44
HHH_9
HHH_3
Tex_N
OB_PDCD11
Motif
Other DBs
NCBI-GeneID:
133874252
NCBI-ProteinID:
XP_062168112
LinkDB
All DBs
Position
7:12894864..12906471
Genome browser
AA seq
1653 aa
AA seq
DB search
MGKTVVSDEEDEVEVEEEDEREPIHGGAARDADDDEEDEEDEEGQDEYEKDGFIVLDDVD
EEEDQDEEERADSDEERQKKKKRKKKENYTLDEDDYELLEDNNITIPRRKQSKKFKRLKK
AQGVGEEESSGFSDEEEIFGTGKSGRTAEEKLKRSLFGDDEGPPLEDIGEEEEQAEDEED
ADIGEEDEMADFIVDEEDEHGAPPKGGKRVKKVGNRRAPGVSSSALQEAHEIFGDVDELL
QLRKQGLDSGEWRERRLEDEFEPIVLSEKYMTEKDDLIRELDVPERMQITEQNTGSPPLD
EVSIDEESTWIHSQLATGTIPLFGKRGRGTPKDGWDLSINKDDIMRFLDLLHVQKLDIPF
IAMYRKEECLSLFKDPEQPEVDDDIQDKNERTPTLKWHKVLWAIQDLDRKWLLLLKRKSA
LQSYYNKRFEEESRRVYDETRLNLNQQLFESIMKALKAAESEREVDDVDSKFNLHFPSGE
VGVDEGQYKRPKRRSLYSVCGKAGLWEVASKFGYSSEQFGLQLSLEKMRNDELEDPKETP
EEMASNFTCAMFETPQAVLKGARHMAAVEISCEPCVRKHVRSNFMDHAVVSTCPTPDGNV
AIDSFHQFAGVKWLREKPLNAFDDAQWLLMQKAEEEKLLQVTIKMPEEDLNKLISDFNEY
YLSDGVSKSAQLWNEQRKLILQDALFGFLLPSMEKEARSLLTSRAKNWLLMEYGNVLWNK
VSVGPYQRKETDISSDDEAAPRVMACCWGPGKPATTFVMLDSSGEVLDVLYTGSLTLRSQ
NVIDQQRKKNDQERVLKFMTDHQPHVVVLGAVNLSCTRLKEDIYEIIFKMVEENPRDVGH
EMDGLSIVYGDESLPRLYENSRISSDQLPGQSGIVKRAVALGRYLQNPLAMVATLCGPGR
EILSWKLSSLENFLTPDEKYGIVEQVMVDVTNQGGLDINLAISHEWLFAPLQFISGLGPR
KAASLQRSLVRAGAIFTRKDFVTVHGLGKKVFVNAVGFLRVRRSGLAASSSQFIDLLDDT
RIHPESYVLAQELAKDVYDEDIRGDANDDDDALEMAIEHVRDRPNILRILDVDAYAKGKN
RENKRETFYDIKRELMQGFQDWRKQYEEPSQDEEFYMISGETEETLAEGRIVQATVRRVQ
AQKAICVLESGLTGMLMKEDYSDDWRESPELSDRLHEGDIVTCKIKSIQKNRYQVFLVSR
ESEMRSNRHQYARNLDPYYHEDRSRLQSEQEKARKEKELAKKHFKPRMIVHPRFQNITLD
EAKEFLSDKDPGESIICPSRHGPSHLTLTLKVYDGVYAQKDIVEGGKEHKDITSLLRIGK
TLKIGEDTFEDLDEVMDRYVDPLVSHLKSMLNYRKFKKGSKAEVDELLKIEKSEYPMRIV
YCFGISHEHPGTFILTYIRSTNPHHEYVGLYPKGFKFRKRMFEDIDRLVAYFQRHVDDPQ
SAQSLRSVAARVPMRSPATGGSSGASMGSGWGGSSNEDGWRGQSYDRDRSSTPGSRTGRN
DHRNGGGGRDGHPSGVPRPYGGRGRGSYNGSRGNSSGKERQDPSYDGGKWDTVSKDGEDG
WGNFPGAKVQNSPGREAFPGGWGSGSGGGGSDNGGWGNGSGGVDGGNWGAAGGNDAAPDN
RSSGWGSSPSPAPKSSAQSQPGNGWSGSSGGGW
NT seq
4962 nt
NT seq
+upstream
nt +downstream
nt
atgggaaaaaccgtagtttctgacgaagaagatgaggtcgaagtcgaagaggaggacgag
agggaacctatccatggaggcgcagcccgcgatgccgatgacgatgaggaggatgaagaa
gacgaagaagggcaggatgagtatgagaaggatggatttatagtgttggatgacgttgat
gaagaagaggaccaagatgaagaggagagggcagacagtgatgaggagaggcagaagaag
aagaaaaggaagaaaaaagagaattatacacttgatgaagatgattatgagctcttggag
gacaacaatattactattcctcgtcggaagcagagcaaaaagtttaagcgtctgaaaaaa
gcccagggggttggtgaggaggaatcctctgggttttctgatgaggaggaaatttttgga
actggtaaaagtgggcgaactgcagaggagaagcttaagcgtagtttatttggtgatgat
gaaggtcctccacttgaggacattggtgaagaggaggaacaagctgaagatgaagaggat
gcagacattggtgaagaggatgagatggcagactttattgttgatgaagaagatgagcat
ggagctcctcccaaaggagggaagcgggtaaagaaagttgggaataggagggcacctgga
gtttcctcgtctgctttgcaggaagctcatgaaatatttggtgatgttgatgaactcctg
cagctccgtaagcaaggtttagattctggggaatggagggaaaggagacttgaagatgaa
tttgaaccaattgttctgtctgagaagtatatgacagagaaggatgacctgattcgggag
cttgatgttccggagagaatgcagataaccgaacaaaacactggttcccctccattggat
gaagttagcatagatgaagagagcacctggatacatagtcaacttgcaactggtacgata
ccattgtttggcaagagaggcagggggactccgaaggatggctgggatctatctattaac
aaggatgatatcatgagatttttggacctattgcatgtgcagaagttagatatccccttt
atcgctatgtatcgaaaggaggagtgcctaagcctattcaaagatcctgagcaacctgaa
gttgatgatgatattcaggataagaatgagaggactcccactcttaagtggcacaaggta
ctttgggcgattcaagacttggacagaaagtggctactgctgctgaagcgaaagagtgct
cttcaatcatactacaataagcgattcgaggaagaatctcgacgtgtatatgatgaaaca
agactcaatttaaatcagcaactttttgaatcaattatgaaggcactcaaggcagcagaa
tcagaaagggaggttgatgatgtggactccaaatttaacttgcatttcccgtcgggtgaa
gttggtgtggatgaaggacaatacaagaggcctaagaggagatcactatatagtgtttgc
ggtaaagctggcctatgggaggttgcaagcaagtttggttacagctctgagcaatttgga
ttgcagctgtcattagaaaagatgagaaatgatgagttggaggatcctaaggaaacacca
gaagagatggcttcaaactttacatgtgctatgtttgagacacctcaagctgtgcttaaa
ggagctaggcacatggcagctgtggagataagttgcgagccatgtgttaggaagcatgtt
cgtagcaattttatggatcatgctgtggtgtcgacatgtcctacacctgatgggaatgtg
gcaatagattctttccatcagtttgcaggggtaaagtggttgcgtgagaagccattaaat
gcatttgatgatgcacaatggctccttatgcagaaggctgaggaggagaagcttcttcaa
gttactattaagatgcctgaagaggatttgaataagttgataagtgactttaacgagtat
tatcttagtgatggagtcagtaaatctgctcaactttggaatgagcagagaaaattgata
ttgcaggatgcactttttggttttcttctaccatcaatggagaaagaagcaagatctttg
ttaactagtagagccaaaaactggttacttatggagtatgggaatgttttgtggaataaa
gtttcagtgggaccgtatcaacggaaggaaaccgatattagctcagacgatgaagctgca
ccaagggtcatggcttgctgttggggccctggaaagccagcaacaacttttgtgatgtta
gattcatcaggggaggttctggatgtgctttacactgggtccctcactttgcggtctcaa
aatgttattgaccagcaacgtaagaaaaatgaccaggaacgagtattgaagttcatgacg
gatcaccaaccacatgttgttgttttaggagctgtcaatttgtcttgtactcgcctgaaa
gaggatatatatgagattattttcaagatggtggaggaaaatcccagagatgttggccat
gagatggatgggctaagcattgtgtatggtgatgaatctttacctcgtctttatgaaaac
tctcggatctcatctgaccagctacctggacagtcaggcattgttaagcgggctgtcgct
cttgggcgatatttgcaaaatccattggcaatggttgctaccctatgtggtcctggaagg
gagatcttgtcatggaaacttagttcactagagaactttctcaccccagatgagaagtat
gggattgttgaacaggttatggtagacgtcacaaatcaggggggccttgacattaatttg
gctattagccatgaatggttatttgctcctttacagttcatttctgggcttggacccaga
aaggcagcatctctacaaaggtccttggtaagagctggggcaatttttacccgaaaggac
tttgtcacagtgcatggacttggtaaaaaggtatttgtcaatgcggtaggttttttgcgt
gtccggcggagtggattggctgctagcagcagccagttcattgatttgttggatgataca
agaatacatccagagtcttatgtccttgcacaagaattggccaaagatgtttatgacgag
gacataagaggtgatgcgaatgatgatgacgatgcactggagatggcaatagagcatgtt
agagaccggcctaatattttgagaatccttgatgttgatgcatatgctaaaggcaagaat
cgtgagaataagagagaaactttttacgacataaaaagggaactaatgcagggttttcag
gattggcgtaagcaatatgaagagccaagtcaagatgaggaattctatatgatttcaggt
gagaccgaggagacccttgctgaagggagaattgtgcaagccacagtccgcagggtgcaa
gctcaaaaagcaatttgcgtgcttgaatctggtttgaccgggatgctcatgaaggaagac
tattcagatgactggagggagagtcctgagttatctgataggctacatgagggtgacatt
gtcacctgcaagattaaatcgattcaaaagaacaggtatcaggttttcctcgtttctaga
gagagtgagatgcgaagtaatcgacatcaatatgctagaaaccttgatccctactaccat
gaagaccggagcaggctacagagtgagcaagaaaaagctcgcaaagaaaaggagcttgca
aagaagcattttaagccaaggatgattgttcaccctcgcttccagaatataaccttagat
gaagcaaaggagttcttgtctgacaaggatcctggcgaaagtattatttgtcccagtcgt
catgggccttctcatttaactctaactctcaaagtttatgacggagtttatgctcagaaa
gacatagtcgaaggtggaaaggagcacaaggacatcacaagcttacttcgtattgggaag
acattgaaaattggggaagacacttttgaggatttggatgaggtaatggatcgatatgtt
gatcccttagtgtctcacttaaagtcaatgctaaattatcgcaagttcaagaagggctca
aaagcagaagttgatgaactcctgaagattgagaaatcagagtatcctatgaggatagtt
tattgttttggcatctctcatgagcatccaggcacatttatcttgacttatataaggagt
acaaatccacaccatgaatatgttggtctatatcctaagggattcaagttccggaaaagg
atgtttgaggacattgatcggcttgtggcatacttccagagacatgttgatgatcctcag
tcagcacaatctctgagatcagttgctgctagggtgccaatgcgaagccctgcaactggg
ggctcatcaggagcatccatgggtagtggctggggtggttcatcgaatgaggatggttgg
agaggtcagtcttacgacagggatcgttcttctactcctggttctagaacaggaagaaat
gatcacagaaatggtggtggtggtcgcgatgggcatccaagtggggtgcctaggccgtat
ggtgggcgtggtcgaggctcatataacggcagcagaggaaatagttccggcaaggagaga
caggatccgagttatgatggtggtaaatgggatacagttagcaaggacggggaagatggt
tgggggaattttccaggtgctaaagttcaaaattctcctggcagggaggctttcccaggt
ggttggggtagtggtagtggtggaggtggcagtgacaacggtgggtggggcaatggaagt
ggtggtgttgacggaggaaattggggtgctgctggtggaaatgatgctgctcctgataat
aggagttccggttggggaagttccccctcccccgcccccaagagttctgcacagtcccag
cctgggaatggatggtctggaagcagtggtggaggttggtga
DBGET
integrated database retrieval system
