Alnus glutinosa (common alder): 133874823
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Entry
133874823 CDS
T10577
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
aglu Alnus glutinosa (common alder)
Pathway
aglu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133874823
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aglu03041
]
133874823
Enzymes [BR:
aglu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
133874823
Spliceosome [BR:
aglu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
133874823
Complex C
U4/U6.U5 tri-SnRNP related factors
133874823
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
AAA_22
DEAD
AAA_19
PWI
AAA_30
T2SSE
nSTAND3
SRP54
AAA_16
ABC_tran
Motif
Other DBs
NCBI-GeneID:
133874823
NCBI-ProteinID:
XP_062168668
LinkDB
All DBs
Position
8:8062734..8079002
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AA seq
1052 aa
AA seq
DB search
MGSESNLKTWVSDKLISLLGYSQPTVVQYIIGLSKQATSPADVEGKLVEFGLSSSSETRA
FAAEIFSRVPRKASGENHYQKQEREAAVLARKQKTYAILDADDDEDNDVGGNVDHRSSVA
DAPETRKVDTHKKRFRKKIESQDDEDDEVIPRGAAERQVKRRISGDEDDSSESEEERLRD
QREREQLELNIRERDAAGTRKLTEPKLSRREEEEAMRRSDALEQDGLETLRKVSRQEYLK
KREQKKMEELRDDIEDEQYLFDGVKLTEVEYRELRYKKEIYELVKKRSEDADNTSEYRMP
DAYDQDGGVNQEKRFSVALQRYRDPTAAEKMNPFAEQEAWEEHQIGKATLKYGSKNKKQI
SDDHQFVFEDQIDFIKASVMDGDNIDDGESTELLEKSMAKSAFEKLQEDRKTLPIYPYRD
ELLKAVHDHQVLVIVGETGSGKTTQIPQYLHEAGYTKRGKVGCTQPRRVAAMSVAARVSQ
EMGVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMLLREFLGEPDLASYSVVMVDEAHERTL
STDILFGLVKDISRFRPDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRYPVEIHYTKAP
EADYLDAAVVTVLQIHVTQSPGDILVFFTGQEEIETAEEILKHRTRGLGTKIAELIICPI
YANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFCKMKSYNPRTGME
SLLVAPISKASANQRAGRSGRTGPGKCFRLYTAYNYYNDLEDNTVPEIQRTNLANVVLTL
KSLGIHDLLNFDFMDPPPSEALLKALELLFALSALNKLGELTKVGRRMAEFPLDPMLSKM
IVASDKYKCADEIISIAAMLSVGNSIFYRPKDKQVHADNARMNFHTGNVGDHIALLKVYS
SWKETNYSTQWCYENYIQVRSMKRARDVRDQLEGLLERVEIELTSDPNDIDAIKKAITSG
FFPHSARMQKNGSYRTVKHPQTVHIHPSSGLAQVLPRWVVYHELVLTSKEYMRQVTELKP
EWLVEIAPHYYQLKDVEDAVTKKKPRGEGLAS
NT seq
3159 nt
NT seq
+upstream
nt +downstream
nt
atggggagtgaaagcaatttgaagacatgggtatctgataaattgatatcgctgctggga
tattctcagcccacggttgttcagtatattatcggactatctaagcaagcaacgtcacca
gctgatgtggagggcaaactcgtggagtttggactgtcttcatcaagtgaaacccgtgca
tttgctgcagaaatcttctctagagtgccccgtaaagcgtctggtgagaatcattatcag
aaacaagagagggaagctgctgtgttggcaaggaagcagaagacttatgcaattttggat
gctgatgatgatgaagacaatgatgttgggggaaatgttgatcataggtcttccgttgca
gatgctcctgaaaccagaaaagtggatacccataaaaaacgtttcaggaagaagattgaa
agtcaagatgatgaagatgatgaggtaattccacggggggcagcagagagacaggttaaa
agacgaatttctggtgacgaagatgacagttcagagtcagaagaagaaaggttgcgtgac
caaagagagagggagcaattggagctgaatataagggaacgggatgcagcagggacacgg
aagttaaccgaaccaaagttatcacggagggaggaagaagaggcaatgaggagatctgat
gctttggagcaagatggccttgaaaccctaagaaaagtttcaagacaagaatatttgaag
aaaagagagcagaagaaaatggaggaattaagagatgatatagaagatgagcaatatcta
tttgatggcgtgaagcttaccgaagtggaatatcgcgagttaaggtacaagaaggaaata
tatgagcttgtgaagaagcggtcagaggatgctgacaatacaagtgagtacaggatgccg
gacgcctatgatcaagatggcggtgttaatcaggaaaagagattttccgtggctttgcag
cgttacagggatccaactgctgcggaaaaaatgaatccttttgcagaacaagaggcttgg
gaggagcatcaaattgggaaggcaacgttgaaatatggttcaaaaaataaaaagcaaata
tctgatgaccatcagtttgtgtttgaggatcagattgattttatcaaagcatcagttatg
gatggcgacaatattgatgatggagaatccaccgagttgcttgagaagtctatggcaaaa
tcagcttttgagaagcttcaggaggatagaaaaacattacctatatatccatatcgtgat
gaattgctcaaagctgttcatgatcatcaggttcttgtcattgttggtgaaactggttcc
gggaagactacacagataccccaatatcttcatgaagctggatatacaaagcgtggaaag
gttggatgtacacagccacgaagggtcgctgctatgagtgttgctgcccgagtttctcaa
gaaatgggtgtcaaacttggccatgaggttggttattccatccgttttgaagattgcact
tcagaaaagactgttcttaaatatatgacagatgggatgttgttgagagaattccttggt
gagccagatctggcaagctacagtgtggtgatggtggatgaggcccacgaaagaactctc
tcaactgatattctatttggattagtaaaggatatttctcgatttcgtcctgatcttaag
ttgcttatctccagtgcaacacttgatgcggagaaatttagtgattattttgattcagct
ccaatctttaaaattccagggaggcgatatcctgttgaaatacactacaccaaagctcca
gaagctgattacttggatgcagccgtagttactgttctccaaatccatgtgacacaatca
cctggagatatattggttttctttactggtcaagaagagattgaaacagcagaagaaatt
ttaaagcacaggacaaggggcctagggacaaagattgctgagctgattatctgcccgata
tatgcaaacctaccgactgagctccaagcaaaaatatttgaacccactcctgaaggagca
cggaaggtcgttcttgcaacaaatatagctgaaacctccttgactatcgatgggatcaaa
tatgtcattgatccaggcttctgtaaaatgaaatcctataatccaaggactgggatggag
tcattgctggttgctcctatttccaaagcatcagctaatcagagggcaggtcgatctgga
cgaacaggtcctggaaaatgctttcgactatatactgcctacaattattacaatgatttg
gaagataatacagtaccagaaatacaaaggacgaaccttgcaaatgttgtccttacactc
aagagccttggtatccatgacttgttaaattttgattttatggacccaccgccatctgaa
gcattattaaaagccctggagctactctttgcactgagtgcattaaataaactaggtgag
ttgactaaagtgggtagacggatggcggagttcccccttgatcccatgctatccaaaatg
atagttgcttctgataagtacaagtgcgcagatgagatcatttccattgctgctatgctt
tcagttggaaactcaatcttttatcgtccaaaggacaaacaagttcatgcggacaatgca
cggatgaattttcatactggaaatgttggggaccacattgcattgttaaaggtctacagt
tcatggaaggagacaaattactcaacacaatggtgttatgaaaattatatacaggttagg
agtatgaagcgtgcaagggatgtgcgagatcagcttgaagggctcttggaaagggttgaa
attgaactaacctcagaccccaatgacattgacgctataaaaaaagctataacatctggt
tttttcccgcactctgcaaggatgcaaaagaatggatcttatcggacagtcaaacatcca
cagactgttcacatacaccccagctcagggctggcacaggtcctccctagatgggttgtg
taccatgagttggtactcacaagcaaggaatatatgagacaggtaacggaactaaagccg
gagtggttggtggaaatagccccacactattaccagcttaaggatgttgaagacgcggtt
acaaagaaaaagcctcgtggagaagggcttgcatcgtag
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