Alnus glutinosa (common alder): 133875023
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Entry
133875023 CDS
T10577
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
aglu Alnus glutinosa (common alder)
Pathway
aglu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133875023
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aglu03041
]
133875023
03009 Ribosome biogenesis [BR:
aglu03009
]
133875023
Enzymes [BR:
aglu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133875023
Spliceosome [BR:
aglu03041
]
Complex A
U1 snRNP components
U1 related factors
133875023
Complex B
133875023
Ribosome biogenesis [BR:
aglu03009
]
Eukaryotic type
Pre-60S particles
Helicases
133875023
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HAD_Pex22
Motif
Other DBs
NCBI-GeneID:
133875023
NCBI-ProteinID:
XP_062168987
LinkDB
All DBs
Position
8:complement(6600461..6604923)
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AA seq
653 aa
AA seq
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MNHYDNRYADPSSYRERRSDLIGPPAPGGPPAIGGYGRGGPVPLGGPPPPVYGRGGGSAP
QSGASNFNGYPPFEPPVGRFDIGRGGGRTGNGHVGVGDRRVGSVGRGGAGGRGYDLGRGG
GRFGTSRDGGVRNKIDGGGRGGNAGFGGGRGGGRGLEGRGGGRGGRHGGGGSRGDLDNIA
LPKQDFGNLVHFEKNFYVETPSVRAMSEHEAVVYRARREITVEGHDVPKPIRMFQEANFP
DYCLEVIAKLGFVEPTAIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRL
VQGEGPIVLVLAPTRELAVQIQEEAVKFASRANIRSTCIYGGAPKGPQIRDLKRGVEIVI
ATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIIAQIRPDRQTLYWSATW
PREVESLARQFLRNPYKVVIGSPYLKANQSIVQVVEVVTEVEKYNRLIKLLKEIMDGSRI
LVFMETKKGCDQVTRQLRIDGWPALSIHGDKSQAERDWVLAEFKTGRSPIMTATDVAARG
LDVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTALTFLTHANAKFARDLVKILQEAG
QVVSPALTALARSAGSALGGSGGNFRSRGRGGYGNRSLISGSNVIPIGGRRPW
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atgaaccactacgacaatcgctacgccgatcccagctcctatcgtgagcgtcggagtgac
ctgatagggccaccggctcctgggggtccaccggcgataggcggctatggccgcggtggg
cccgtcccgttggggggtccccctcctccggtttatggaagaggtggtgggtcggcacca
caatccggtgccagtaatttcaacgggtatccgccgtttgagccgccggttggccgattc
gatatcggccgaggcggtggaagaacgggaaatggacatgtgggagttggggataggaga
gtgggcagtgtaggccgtggtggtgctggtggaagaggctatgatttggggcgtggcggt
ggtagatttggtacaagccgtgatggtggtgtgaggaataagattgatggtggagggcgt
ggtgggaatgcaggttttggcggtggacgaggtggtgggaggggattggaggggcgtggt
ggtggaagaggaggtagacatggtggtggggggtcgagaggggatttggacaacattgct
ttgcccaagcaggattttgggaatttggtccattttgagaagaatttttatgttgagact
ccttcggtgcgggcgatgagtgagcatgaagctgtggtttatcgggcgagaagggagatc
acggtcgaagggcatgatgtcccaaagccaattaggatgtttcaggaagctaatttccct
gattactgccttgaggtgattgcaaaactgggttttgttgagccaacagcaattcaggct
caaggatggccaatggctcttaagggtagggatttaattggtattgctgagactggttct
ggtaagactttggcatatctgcttcctgctttggtacatgttagcgcacagcctcgattg
gtacaaggtgaaggtcccattgtattggtgttagcacctacaagagaattagccgttcaa
attcaagaagaagctgtaaaatttgcgtcacgtgccaatattagaagtacatgcatatat
ggtggtgctcctaaagggcctcaaattcgtgatcttaaaagaggtgtggagattgtcatt
gctacacctggtcgactgatagatatgttggaagcccaacatacaaacttgcgaagagtg
acttacctcgtgttagatgaggctgatagaatgttggacatgggatttgagcctcaaatt
aggaaaattattgcccagatccggccagatagacagacattgtattggagtgccacatgg
ccaagggaggttgaatctcttgcaaggcagtttttacgcaatccatataaggtagttatt
ggatcaccgtatctgaaagcaaaccaatctatagttcaagttgttgaagttgtgacagag
gtggagaaatataataggctgatcaaactgcttaaagaaatcatggacgggagccgaatt
ctagtattcatggagacaaaaaaaggatgtgaccaagtcacaaggcaattgagaattgat
gggtggccggctctatccatccatggcgataaaagccaggctgaaagggactgggtcctt
gctgagtttaaaactggcagaagtcctataatgactgccactgatgttgctgcacggggt
cttgatgtgaaggacataaaatgtgtgatcaattatgatttcccatcaagccttgaagat
tatgtccacagaattggccgaactggtagggcaggggcaaaggggactgccctcacgttc
ttaacacatgcaaatgcaaagtttgctagggatctggtcaagatcttgcaagaagcaggg
caagttgtgagtcctgcattgactgcattggcccgatcagctggttcagctctgggagga
tctgggggaaacttccgctcgagaggacgaggcgggtatggcaatcggtctctgatttca
ggctctaatgttatccccattggtggaaggagaccatggtag
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