Alnus glutinosa (common alder): 133875465
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Entry
133875465 CDS
T10577
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B
KO
K07466
replication factor A1
Organism
aglu Alnus glutinosa (common alder)
Pathway
aglu03030
DNA replication
aglu03420
Nucleotide excision repair
aglu03430
Mismatch repair
aglu03440
Homologous recombination
aglu03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
133875465
03420 Nucleotide excision repair
133875465
03430 Mismatch repair
133875465
03440 Homologous recombination
133875465
03460 Fanconi anemia pathway
133875465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
aglu03000
]
133875465
03032 DNA replication proteins [BR:
aglu03032
]
133875465
03400 DNA repair and recombination proteins [BR:
aglu03400
]
133875465
Transcription factors [BR:
aglu03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
133875465
DNA replication proteins [BR:
aglu03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
133875465
DNA repair and recombination proteins [BR:
aglu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
133875465
MMR (mismatch excision repair)
133875465
DSBR (double strand breaks repair)
HR (homologous recombination)
133875465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Motif
Other DBs
NCBI-GeneID:
133875465
NCBI-ProteinID:
XP_062169595
LinkDB
All DBs
Position
8:8826546..8830177
Genome browser
AA seq
628 aa
AA seq
DB search
MAKSVSADAISTILANPSPESSADVPEIVVQVVDLKATGTGGSRIMFSASDGKRKLRAIL
PASMSSEVMSGKIQNLGLIRILDYTLNDIPNKPDKYLIVTNCEVVSPPLESEIVSEVKSE
ETGIFLKPKQESEIKSEVKSEAPGIVLRPKQEMVAKSAAQIVHEQRENMAPAARMSMTRR
VFPLVSLNPYQGSWTIKVRVTSKGNMRTYKNARGEGCVFNIELTDEDGTQIQATMFNEAA
KKFYDRFQLGKVYYISKGSLKLANKQFKTVKNDYEMTLNENSEVEEARNEETFVPETKFD
FVQIDELGPYVNAKELVDVIGVVQNVSPTMSIRRKSDNENIPKRDITIADETKKTVVVSL
WNELATNIGQELLDTANQSPIVAIKSLRVGDFQGVSLSTIGRSTVIVNPDIPEAKKLRSW
YDSEGKESSMASVSAGMSPSTKSGSRSMYSDRISLSHVTSNPSLGEDKPVFFSIRGYISF
IKPDQTMWYRACKTCNKKVTEALGAGYWCEGCQKNEEECNLRYIMVVKVSDASGEAYLSA
FNEDAEKIVGCSADELEKLKSQVGEENSFQTKLKEATWNSHLFRISVAQNEYNHEKRQRI
TVRAVAPVDFAAESRFLLEEISKMRVSK
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagtcggtgagcgcagatgcgatatcgaccatactagcgaacccgtcgccggaa
tcttccgcggacgtcccggagatcgtcgtccaagtcgtcgatctcaaggccacaggcacc
ggcggtagccgtattatgttttcagctagtgatggaaagaggaagctaagagcgattctc
ccagcaagtatgagttctgaggtgatgtcaggaaagattcagaacctgggtctcattcgc
attcttgattatactctcaatgacattcctaacaagcctgacaaatatctaatcgtcaca
aattgtgaggtggtttctcccccgcttgaatctgagatcgtttccgaggtaaagagtgag
gaaactggcatttttttgaaaccaaagcaagaaagtgagatcaagagcgaggtaaaaagt
gaagcacctggcattgttttgaggccaaagcaggagatggttgcaaaatcggctgctcag
atcgtacatgaacagcgtgaaaatatggccccagctgcacggatgtccatgacgcgaagg
gtttttcctctggtttccttgaacccttatcaaggcagttggaccataaaggttcgtgtc
acaagcaaaggaaacatgcgtacctataagaacgctagaggagaaggctgtgtcttcaat
atagagttgacagatgaagatggcacacaaatacaagcgacgatgttcaatgaagctgca
aagaaattctatgacagatttcaactggggaaggtttattacatttcaaagggaagtctg
aaacttgctaacaagcagtttaagacagtgaaaaatgactatgaaatgaccttgaacgag
aattctgaggtagaagaggcccgcaacgaagagacctttgttcctgaaacaaaatttgat
tttgtccagattgatgagttgggtccttatgtcaacgcgaaggagcttgtggacgtcatt
ggagtagttcaaaatgtgtctcctacaatgagcatacggaggaagagcgataatgagaat
atcccaaagcgtgatattaccattgctgatgagacgaaaaagacagttgtggtctccttg
tggaatgagctggcaaccaacatagggcaggagcttttggatactgcaaaccaatctcct
atagttgcaattaaatctcttagagttggggactttcaaggtgtatctttgtcaacaata
ggcagaagcacagtaattgtaaatcctgatatacctgaggcaaagaagttgagatcctgg
tatgattccgagggtaaagaaagttcaatggcttctgtcagtgctggtatgagcccatca
acgaagagtggttcaagatcaatgtactctgaccgaatttctctttctcacgtaaccagt
aacccatccttgggcgaggacaagcctgtatttttcagcattagaggatatatcagcttc
atcaagcctgatcagacaatgtggtaccgtgcttgcaaaacttgcaacaaaaaagtgaca
gaggctttgggggctgggtattggtgtgaagggtgccagaaaaatgaagaagagtgcaat
ttaaggtatataatggtagtcaaagtttctgatgcaagcggtgaagcgtatttatctgcc
tttaatgaggatgcagagaaaattgttgggtgctctgctgatgagctcgagaagctgaaa
tcacaggttggagaagagaattccttccaaacaaaactgaaagaagctacttggaattct
catcttttccggattagcgttgctcagaatgagtacaatcatgagaaaaggcaaaggatc
acagtcagggctgttgctccggttgattttgctgccgagtcaagatttttgctggaagag
atatcaaagatgagagtttctaaatag
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