Alnus glutinosa (common alder): 133875522
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Entry
133875522 CDS
T10577
Name
(RefSeq) endoribonuclease Dicer homolog 2-like
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
aglu Alnus glutinosa (common alder)
Brite
Chromosome and associated proteins [BR:
aglu03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
133875522
microRNA pathway
RISC loading complex
133875522
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GFIT
Other DBs
NCBI-GeneID:
133875522
NCBI-ProteinID:
XP_062169668
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Position
8:complement(7417701..7429934)
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AA seq
1399 aa
AA seq
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MEIDRSQQLSVDPLPFARSYQLEALELAIKQNTIVFLDTGSGKTLIAIMLLRSYAYLLRK
PSPFIAVFLVPQVVLVSQQAEAVKMHTDLNVGMYCGDMGVDFWDAATWKEEIGKHEVLVM
TPAILLAGLRHSFFKLSMIKVLIIDECHHARGKHPYACIMTEFYHRQLSYARSDLPRIFG
MTASPIKTKSGDSENSCWQKISELETMMSSKVYTCASESVLAQFIPFSTPKFKFYSHKEI
PCTLYDRLAHDLQSLEKKHLRSLKILGLGESAADATGKKIKKIFLALIFCLDELGIWLGL
KATQSFSCNESDICNDTDLIPWGKLDVRSQAIVNNFSLAAFDAFASYVPSGPDWSIGDNV
EANVDAGLVTSKVACLIESLLEYRDLKDIRCIVFVERVVTAVVLHYLLNELLPKYSSWKS
KYIAGNNSGLQSQTRKKQNEIVEEFRQGMVNIIVATSILEEGLDVQSCNLVIRFDPSSTV
CSFIQSRGRARMQHSDYILMMKSEDFATRSRLEKYLASGDIMRKASLRHASLPCSPLQSD
VNDEEVYYVESTGASVTLNSSVGLIYFYCSRLPSDCYFKPAPRWDEKTRTLHLPKSCPLQ
KVVVEENINSRIMKQIACLEACKKLHEIGALTDNLVPDIVVEEGTVQECGNKHYIDEQPS
YFPPELVGCRPKNSKIMYHCYLIELKQNFGYDVPVHDIMLVMRSKLDSDVGSMNFDLDVD
RGSLAVNFKYVGEIHLSPDHVLLCRRFQITLLRVLIDHNLNNLKELLDGDCSGDNIEIDY
LLLPASGKDVKSLIDWECITSVDFSCEKFCEYHLNCSLPKGHARCVQTKDGSVCTCMLRN
SLVYTPHNGHVYCITGILGLNGNSLLKLRDGRMVTYKKYFQERHGIKLHFDQESLLNGRH
LFQLQNYLQRCRKQKEKESGHTTVELPPELCKIIMSPISITTFYSFSFVPSIMHRLESLL
MAVNLKKMHLDHCMQNEVIPTIKVLEAITTKKCQESFHLESLETLGDSFLKYAATQQLFK
TYQNQHEGVLSVKKEKIISNAALCKFGCDRKLPGFIRNESFDPIKWIIPGDRYQTYALSE
ELFLSTRKIYVRESRKVKSKTVADVVEALIGAFLSTGGETAALLFMDWMGIKVDFHVTPY
ERHFQVHAEKLLNVRHLESLLNYSFRDTSLLLEALTHGSYMLPEIPRCYQRLEFLGDAVL
DYLVTMHFYHKYPGLSPELLTDMRSASTNNDCYARSAVKFELHKHILHASQELHRHVVET
VNNFDKLSSKSTFGWESETTFPKVLGDVIESLAGAILVDSGYNKEIVFESMRPLLEPLIT
PETVTPHPVKELNELCQARHYNLKEPTKTRNKGMALVTIEVEANGISFKHTATAADKKTA
KKIASKEVLKSLKEQIPMK
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
atggaaatagacagatcccagcaactatctgttgatcctcttccatttgccagaagttat
cagcttgaagctctggagctggcaatcaagcagaacactatagtgtttttggacactggc
tctggcaagactctcattgccatcatgcttctgcgcagctacgcctatcttctccgcaag
ccatcacctttcattgcagtcttcttagttccgcaagttgtcttggtctctcaacaagct
gaagctgtgaaaatgcataccgacttgaatgtgggtatgtattgtggagatatgggagtt
gacttctgggatgctgctacatggaaggaagaaataggaaaacatgaggtgcttgtgatg
acacctgcaattttgcttgctggtttgaggcatagttttttcaagctaagcatgataaag
gttttaataatcgatgaatgccaccatgccaggggtaaacacccttatgcttgcattatg
acggagttctatcaccgtcagctaagttatgctagatctgatcttcctagaatatttggg
atgactgcttctcccataaagacaaagagtggagactctgaaaactcttgctggcaaaag
atttccgaacttgagaccatgatgagctcaaaggtgtatacttgtgctagtgaatctgtg
cttgctcagtttataccattttcgactccgaagtttaaattctatagccacaaggaaatt
ccatgtaccttatatgatcgattagctcatgatttgcagagtttggaaaaaaagcatcta
cgctcactgaaaatccttggtctcggagaatctgctgcagatgctactggcaaaaagata
aaaaagatttttttagctttaatattctgtttggatgagcttggtatttggctgggtcta
aaggctacacagtccttttcatgcaatgaatctgacatatgtaatgacactgacttaatt
ccatggggaaaactggatgtgcgtagtcaggcaattgttaataatttcagtttggctgca
tttgatgcatttgcctcttatgttccatcaggtccagattggtctattggtgataatgtt
gaagccaatgtggatgcagggcttgtaacttcaaaagttgcctgcctcattgaatctctt
ctcgagtacagggatttaaaggatattagatgtatagtctttgtggaaagggtcgttaca
gccgttgtcttacattatctattgaacgagttgcttccgaaatacagcagttggaagtct
aaatacattgcaggcaataactctgggttgcaatcccagacaaggaaaaaacaaaatgaa
attgtggaagaatttcgtcaaggcatggtgaacatcattgttgcaacatcaattcttgaa
gaaggtttagatgttcaaagctgcaacttggtgattagatttgacccatcttccaccgtt
tgtagtttcatacaatccagaggccgtgctagaatgcaacactcagattatatattaatg
atgaagagtgaggattttgctactcgatctcgactagagaaatatcttgctagtggagat
attatgagaaaggcatccttacgccatgcttcgcttccttgctcaccccttcaaagtgat
gtaaatgatgaggaagtttattatgtcgaaagcactggagcgtctgtgacactgaattct
agtgttggtttgatatacttctattgctcacggctcccttcggattgctattttaaacca
gctccaaggtgggatgagaagactcgcactctacatcttcccaagagctgtcctttacag
aaagttgttgtagaagaaaatatcaactctagaattatgaagcagattgcctgccttgaa
gcatgtaagaaacttcatgagattggtgctttgacagataatcttgttccagatattgtt
gtggaagaaggcacggtgcaagaatgtgggaataaacattatattgatgagcaacccagt
tacttcccacctgaactggtcggttgtcgtccaaagaattctaaaataatgtatcattgc
tatttaattgagttgaagcagaactttggttatgatgttccagttcatgacatcatgctt
gtcatgagaagtaagctagattctgatgttggaagcatgaattttgacttggacgttgac
aggggtagcttggcagtgaactttaaatatgtaggagagattcatcttagcccagatcat
gtccttttgtgtagaaggtttcagataactcttttaagagttcttattgatcataatttg
aataacttaaaggagcttttggatggagattgttcaggagataatattgagattgactat
cttttgcttccagccagtggcaaagatgtgaaatctttgattgattgggaatgtattact
tctgttgacttttcatgtgaaaagttttgtgaatatcacttgaattgttctctgcccaag
ggtcatgctcgttgtgtacagaccaaagatggttctgtatgcacatgcatgcttcggaat
tctttggtctatacccctcacaatggtcatgtgtactgcataactggaattttgggatta
aatggaaactcacttctgaagctcagagatggcagaatggttacatacaagaagtacttt
caagagcggcatggcatcaagctgcattttgatcaagaatcattgcttaatgggagacat
ctttttcagttgcaaaattaccttcagagatgcagaaaacagaaagagaaagaatcaggt
catacaacagttgaattgcctccagaactttgcaaaataatcatgtcaccaatatcaatc
actacattttattcgttctcatttgttccttcgatcatgcatcggcttgagtctttgctc
atggctgtcaatttaaaaaagatgcatttggatcattgcatgcaaaatgaagttattcca
accattaaggtcttggaagcaattactactaagaaatgccaagagtcattccacttggaa
tccttagaaactcttggagattcttttctcaaatatgctgctactcaacaacttttcaag
acatatcaaaatcaacatgagggtgtccttagtgtgaagaaagaaaaaataatttctaac
gcggctctttgcaagtttggatgtgaccgcaaacttccgggatttattcggaatgagtcc
ttcgatcctataaagtggataattcctggagatagatatcagacttatgcattaagtgag
gagttgttccttagtacgagaaaaatctatgttagggaaagtagaaaggtgaaaagtaaa
acagttgctgacgttgttgaagcactaattggtgcatttcttagcacaggtggtgaaact
gcagccttattatttatggattggatgggtataaaggtagacttccatgttacaccgtat
gagaggcacttccaagttcatgcagagaagcttctaaatgtcagacatttggagtccttg
ttgaactactcattccgtgatacctctctgttactggaagctctgacccatggttcttac
atgcttcctgagattccaagatgttatcagcgacttgaatttcttggggacgcggtgcta
gattatcttgtgaccatgcatttctaccataaatatcctgggttgtctccagaattgtta
actgacatgagatctgcttctacaaataatgattgttatgcacgatctgcagttaagttt
gaactgcacaaacacatcctccatgcctcacaagaactccacaggcatgtagtggaaaca
gttaacaattttgataagttatcctcaaaatcaacttttggttgggagtcggagacaact
ttccccaaggtacttggtgatgttatagagtctttggcaggtgccattcttgtcgattcg
gggtacaataaggagatagtctttgagagtatgaggcctcttttggagcctctgattact
cctgaaacagtgacacctcatcctgtaaaggagttaaatgagctatgccaagcaaggcat
tataatctgaaagaacccaccaagacccgcaataagggtatggctttagtcacaatagag
gttgaagcaaatgggatctctttcaagcatacagccacggctgctgataaaaagacagcg
aaaaagatagcatcgaaagaagtattgaagtcactgaaggaacaaattcctatgaaatga
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