Alnus glutinosa (common alder): 133875546
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Entry
133875546 CDS
T10577
Name
(RefSeq) protein PAT1 homolog
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
aglu Alnus glutinosa (common alder)
Pathway
aglu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133875546
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aglu03019
]
133875546
Messenger RNA biogenesis [BR:
aglu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133875546
mRNA degradation factors
5'-3' decay
Decapping complex
133875546
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
133875546
NCBI-ProteinID:
XP_062169698
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Position
8
Genome browser
AA seq
823 aa
AA seq
DB search
MDASCAGGSIEEPPNRRDLKQFGDNPTVFDASQYAFFGKDVVEEVELGGLEDEEVGLPAV
GTDEEEFMYNIEEGEDLQSLSDIDDLASTFSKLNKVVSGPRSTGVIGDMGSREGSSVAEW
AQGEDFPYWLDPHGFDSESSQEGKRWSSQPSGRLAESKPLYRTSSYPEQQQQPHHQNHQP
FTSEPILVPKSSFTSYPPPGGRSPLGSPNQHSGHLNIPYITGGPEMALSSPNLSPFSNSR
PQLIGLHQGSNFGGNVPQFSHSVSVNSRPPNQWVNQSNFYPGDHSSLVNNLLQQRLPHQN
GLMPPQVMPQPQPQQHRLHHPVQPSFGHLSGFQSQLFNPHLSPGPPLMSKFDAMLGLSDM
MRDQRPKSAQRGRLNLRLSHQGFDTSSHKSDTGWPQFRSKYMTSDEIESILRMQLAATHS
NDPYVDDYYHQACLAKKSAGAKLKHHFCPNQLRDLPPRARANAEPHAFLQVDALGRVPFS
SIRRPRPLLEVDPPNLSVAGSNEQKVLEKPLEQEPMLAARVTIEDGLCLLLDVDDIDRFL
QFNQLQDGGAQLRRRQQVLLEGMAASLQLVDPLGKNGNTVGLAHTDDLVFLRLVSLPKGR
KLLARYLQLLYPGGELMRIVCMAIFRHLRFLFGGLPSDLAAAETTDNLARVVSLCVCGMD
LSAISACLAAVVCSSEQPPLRPLGSSAGDGASLILKSVLERATELLTDPHAASNYNITNR
SLWQASFDEFFGLLTKYCINKYDSVMQSLLMQAPPNVAAIGSDAARAISKEMPVELLRAS
LPHTDELQKKVLLDFAQRSVPIDGFNSNGGESAGLMNSESVLS
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
atggatgcgtcttgtgctgggggtagtattgaagagcctcccaaccgtagagatcttaag
caattcggagacaatcccacagtatttgatgcatcacaatatgcgttctttggtaaagat
gttgttgaggaagttgagttggggggcttagaagatgaggaggtcggtttgcctgcagtt
gggacagatgaggaggaatttatgtacaatatagaagagggtgaggatttacaatctctg
tctgatattgatgatcttgctagtactttctcaaagttgaacaaggttgttagtggacca
agaagcactggagttattggtgatatgggatccagagaaggttcatctgttgctgaatgg
gcacaaggggaggattttccttactggttggatccacatggatttgactctgaaagcagt
caggaaggcaaacggtggtcatcacagccatctggtcgccttgcagaatcaaagcctttg
tacagaacgtcttcataccctgagcagcaacaacagcctcatcaccaaaaccaccaaccc
ttcaccagtgagccaattcttgttccaaaatcttcttttacttcatatcctccccctggt
ggcaggtctcccctgggttcaccaaaccagcactcgggccacctgaacatcccatatatt
actggtggacctgagatggcgttatcttcaccaaatctgtctcctttctcaaattctcgg
cctcagttgattggtttgcatcagggttcaaattttggtgggaatgtgcctcagtttagt
cacagtgtctctgttaatagccgaccaccaaaccaatgggttaatcagtccaacttttat
cctggagatcattcgagtcttgtcaacaatttgttgcaacaacggttacctcatcagaat
ggattaatgcctccacaagtgatgccgcaaccacagccgcagcagcataggctgcatcat
cctgttcagccatcatttggccatttatcgggatttcaatcgcaactatttaatccacat
ctttctccagggccacccttgatgagcaagtttgatgcaatgcttggcctttctgatatg
atgagagatcaaagaccaaaatcagctcagagagggagactgaatctccggctttcccat
cagggctttgataccagtagccacaagagtgatactgggtggccgcagtttagatcaaag
tatatgacatctgatgaaatagagagtatccttcgaatgcagcttgctgcgacgcatagt
aatgacccgtatgtagatgactattatcaccaggcttgtcttgcaaagaaatctgctggg
gccaaactgaaacatcatttctgccctaatcaactgagggatcttccacctcgtgcccgt
gctaatgctgagccacatgcttttctccaagttgatgctcttgggcgggttccattttct
tcaattcgtaggccccgtcctcttcttgaagttgaccctccaaatctgtctgttgctggc
agcaatgaacaaaaagttttggagaagccccttgaacaagagccaatgcttgcggctaga
gtgacaatcgaggatggtttatgtcttcttcttgatgtagatgatattgaccgtttctta
cagttcaatcagctccaagatggcggggcccagttgagacggaggcagcaagtcctgctg
gaagggatggcagcatcgcttcaactggttgacccacttggcaaaaatggcaacacagtt
gggcttgctcatacggatgatttggtcttcttacggttggtttctcttcccaagggccgg
aagctccttgcaaggtatcttcagcttctctatcctggtggcgagctcatgcgaatagtt
tgcatggcaattttccgtcatttaaggttcttatttggtggccttccctctgatctagca
gcagcagaaacaacagataatcttgcaagggttgtctcactgtgtgtttgtggcatggat
cttagtgcaatcagtgcctgtctagcagcagtagtttgttcctcagagcagcccccactt
cgtcctcttggaagctcagctggagatggggcttccctgattctaaaatctgtactggag
cgggcaactgagcttttaactgatcctcatgctgctagcaactacaacataactaatcgg
tcactttggcaggcctcatttgatgaattctttggccttctcaccaagtactgcataaat
aaatacgacagtgttatgcaatctttgcttatgcaagctccaccaaatgttgctgctatt
gggtcagatgcagccagagctattagtaaggaaatgccagttgagctgttacgtgctagt
cttcctcacactgatgagctccaaaaaaaggtgttgttggattttgcacagcgctctgtg
ccaatagatggatttaacagtaatggtggggagagtgctgggctcatgaattctgagtcg
gtgctgagttga
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