Alnus glutinosa (common alder): 133875943
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Entry
133875943 CDS
T10577
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
aglu Alnus glutinosa (common alder)
Pathway
aglu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133875943
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aglu03019
]
133875943
Messenger RNA biogenesis [BR:
aglu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133875943
mRNA degradation factors
5'-3' decay
Decapping complex
133875943
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40
WD40_Prp19
Beta-prop_TEP1_2nd
PEP5_VPS11_N
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
WD40_MABP1-WDR62_2nd
Beta-prop_EML_2
Beta-prop_RIG_2nd
EIF3I
DUF4197
Motif
Other DBs
NCBI-GeneID:
133875943
NCBI-ProteinID:
XP_062170208
LinkDB
All DBs
Position
8:29678697..29687040
Genome browser
AA seq
1380 aa
AA seq
DB search
MASSGNPNQQQQPIATFDMHTFFKPTNPSPPQPPNPPNLNTSPPFPPPSGPYSYPPQSAP
FQPNPYQHYPYHPQPQNSPLHHQRSLSYPTPPLQPPISSPTNPNPNSGARLMALLNPNQP
PPPAPPNPPSSPAIMNLMPPPPIRMPSSKLPKGRHLGGDRVVYDVDVRLEGEAQPQLEVT
PITKYQSDPHLVFGRQIAVNKSYICYGLRQGNIRVLNINTALRSLLRGHAQRVTDMAFFA
EDVHLLASVGVDGRVYVWKISEGPDEEDKPQITGKAVVAIQITGEEGATHPRVCWHCHKQ
EILVVGIGKRILRIDTIKVGKNEVYSAEEPLKCHVDKVIDGVQLVGNHDGEVTDLSMCQW
MTTRLVSASTDGTVKIWEDRKFAPLAVFRPHEGQPVCSATFLTASHRPDHIILITAGSLN
REVKTWALTSEEGWLLPSDAESWKCTQTLELKSTAEPRVEEAFFNQVAALSKAGLLLLAN
AKKNAIYAVHLDYGPNPEATRMDYIAEFTVTMPILSFTGTSDILPHGENIIQVYCVQTQA
IQQYALDLAQCLPPPLEYMGLEKSDSNVLRDATSAEGFAALDPSGSKPTEMLPLAGSTPK
QNIQVSSSESATAVRYPVSSGSAEAATSKDINSLSTEYKPVALTPVTSDADGVSVASPPL
PLTPRLSRELSGFRSPSSNFEPGPPLSIHVGDQPVNDYSVDRQVDTIRANFFDVPPLDDD
SRNDKTKATSNAQDDLPSVLNPHLMFKQPTHLVTPSELKENSSSGTTNAIDGKSEGEASI
QDVIVNSDAGNAEVEVKVVGETRSTQNDEFGPQGDSQKLSLENKEKYFCSQASDLGIEMA
RECCAISAEPYIMEEARQVDGVNVMDPLAEHPNADEDEVPGSTKNVSGKVSESSTSTPVQ
PSSTPNTKGKKQKGKNSQASRPSSPSPGAFNSTDSLNEPSGSTSLPSSEAPFSQILAMQE
TLNQLMSMQKEMQKQMTTMISVPVSKECKKLEANLGRSMEKAVKANTDALWARFQEENAK
NEKLLRDRTQQITSLISNFMNKDFPMLLEKAVKKEMAAVGPAVVRSITPAIEKTISSAIV
ESFQRGVGDKAVNQLEKSINVKLEATVARQIQAQFQTSGRQALQDALKHSLETSVIPAFE
MSCKAMFEQVDTTFQKGMIEHSTAAKQHFESAHSPLAHALRDAINSASTVAQTLGGEVLE
GQRKLLSLAAAGANSSAVNPLVSQLSNGPLGGLHEKVEVPVDPTKELSRLVSERKYDEAF
TAALQRSDVFIVSWLCSQVDLRGILSVVPLPLSQGVLLSLLQQLACDISNDLPRKLAWMT
DVANAIIPTDPMIAMHVRPIFDQVYNILNHQRGLPTITGAELSNIRLLMHVINSMLTTCK
NT seq
4143 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgtctggtaacccgaaccagcaacagcagcccatcgccaccttcgacatgcat
accttcttcaaacccacgaacccttcgccgccgcaaccaccgaaccctccaaatctaaac
acttcgcccccatttccgcctccctccggcccctactcctacccgccccaatccgcaccg
tttcaacccaacccttaccaacactacccttaccatcctcaaccccaaaactcacccttg
caccaccagcgctccctctcctaccccactcctcctctacaacccccaatctcttcgcca
actaaccctaaccctaactctggggcccgcctcatggctctcctcaaccccaatcagccc
cctccgccggccccacccaaccctccctcctcgccggcgatcatgaatctgatgccgccg
ccgccgattcggatgccgagcagtaagctccccaagggccggcacttgggcggcgaccgc
gtggtctacgacgtcgacgtgaggctggaaggggaggcccagccccagctggaggtcact
cccatcaccaagtaccagtccgatccacacctcgtcttcggccgccagattgccgtcaac
aagtcctatatctgctatggtttgcgccagggcaatatccgcgtcctcaacatcaacact
gctttgcgctctctgcttcgcggtcacgcccagagggtcacagacatggctttctttgct
gaggatgttcaccttttggctagtgttggcgtagatggacgggtttatgtgtggaagatt
tctgaaggccctgatgaagaagataagcctcaaattacaggaaaagctgttgttgccatt
caaattacaggagaggagggagctacacatccacgagtttgttggcactgccacaaacaa
gaaattttggtcgttgggattggaaaacgaattctgagaattgataccatcaaagttgga
aagaatgaagtgtattcagcagaggaacctctcaaatgtcatgttgataaggttattgat
ggggtccagcttgttggtaatcatgatggagaagtgactgatttgtcgatgtgccaatgg
atgacaacccgtttagtttctgcttctactgatggaacggtaaagatctgggaagatcgc
aagtttgcaccactcgcggtattcagaccacatgaaggccagcctgtttgttcggcaaca
tttttaactgcttcccatcggccagatcacatcatacttattacagcgggatcactaaat
cgagaagtgaagacgtgggcattgacaagtgaagaaggctggctactgcctagtgatgcc
gaatcatggaagtgtacccagacattggaattgaagagcacagctgaacctcgagttgag
gaggcattcttcaatcaagtcgcggcattgtccaaagcaggccttctcttacttgcaaat
gctaagaagaatgctatatatgctgtacacttagactatggtcctaatccagaggcaacc
cgcatggattacattgctgagtttacagtaaccatgcccattttgagttttacagggaca
agtgatatattacctcatggtgaaaatattattcaggtttattgtgtccagacacaagcc
attcagcaatatgctttggacttggcccagtgcttgccaccaccactggagtacatgggg
ttagaaaagtcggattcaaatgttttgcgtgatgcaactagtgcagaaggatttgctgct
ttggacccatctggaagtaaacctacggagatgctgccattagctggttcaactcccaaa
caaaacatacaagtaagtagctcggagagtgcaactgcagtgaggtatcctgtaagctct
ggttctgctgaggctgcaacttcgaaagacattaacagtttgagtacagaatataaacct
gttgcactgacaccagtaactagtgatgctgatggtgtttctgtcgcatcacctcctctt
cctttgactcctaggttgtctagagagctttctggttttaggagtccatcaagtaacttt
gagccaggtccccctctcagtatccatgttggagaccaaccagttaatgactattcggtt
gacaggcaagtggacaccattcgtgcaaacttttttgatgtgcctccattggatgatgat
tctaggaatgataagacaaaagctacgtcaaatgcacaagatgatttaccttctgtgctt
aatcctcatctcatgttcaaacaaccaactcatctggtaactccctctgagttaaaagaa
aattcatcctctggaactactaatgctattgatggcaagagtgagggagaggcaagtatc
caggatgtgattgtcaacagtgatgcgggtaatgctgaggtggaggtgaaagtagttggt
gaaacaagatctactcaaaatgatgaatttggccctcagggagattctcaaaaactttcg
ttagaaaataaggaaaaatacttctgttcgcaagcttcagatcttggtattgagatggcc
cgagaatgctgtgctatatcagcagaaccttatatcatggaggaagctcggcaagtcgat
ggtgtcaatgtaatggacccattggccgaacatcctaatgctgatgaggacgaagtccct
ggctccacaaaaaatgtgtctggaaaggtttctgagtcatctacgtccacaccagtccag
ccatcatccacaccaaatacaaaaggaaaaaaacagaaggggaaaaattctcaagcttca
cgtccatcttcaccatctccaggtgcttttaattcaacagattctttgaatgaaccaagt
ggaagtacgagtctcccctcttctgaagcccctttttctcaaattttggccatgcaggag
acgcttaatcagctcatgtcaatgcaaaaggaaatgcagaagcagatgacaacaatgata
tctgttccagttagcaaagaatgtaaaaaactagaggcaaacctggggcgtagtatggag
aaagctgtcaaggccaatacagatgctttgtgggctcgttttcaagaagagaatgcaaaa
aatgagaagttattacgagaccgtacacagcaaatcaccagtttgattagtaactttatg
aataaagacttcccaatgttgttagaaaaagcagtgaagaaggaaatggctgcagtaggg
ccagcagtagttcgctcaatcactccagctattgagaagacaatatcttcagccattgtg
gagtcttttcagagaggagttggtgataaggcagttaaccaactggagaaatctatcaat
gtaaaacttgaagctactgttgctaggcaaatccaagcacagtttcaaacttctggcaga
caagctcttcaggatgctttaaaacatagtttggaaacatcagtgatccctgcctttgag
atgtcatgtaaagccatgtttgagcaagtagacacaacatttcagaaaggaatgattgaa
cattcaactgcagctaagcaacactttgagtctgcacattctccattggcacatgctcta
agggatgccattaattctgcgtcaacagtggctcaaaccttgggcggagaagtgctcgag
ggtcaaagaaagctattatctcttgcagctgcaggagcaaactcaagtgcagtcaatccc
ttggtctcccaactgagcaatggacccttgggtggtctccatgagaaggttgaggtgccc
gttgatccaacgaaggagttatcaagattggtatctgaacgcaaatatgacgaggctttc
actgcagccctacaaagaagtgacgtgttcattgtatcctggctatgctcccaggttgat
ctacgggggatcttgtcagtggttcctctcccattgagccaaggagttttgctctctctt
ttgcagcaactagcctgtgatatcagtaacgacttaccccgaaagcttgcttggatgaca
gatgtggctaatgccataatcccaacagacccaatgattgcaatgcatgtgcggcccatc
tttgatcaagtctataacatactcaaccatcaacgtggcttgcctacaattactggtgct
gagctctcaaatatccgtcttttgatgcatgtcatcaattctatgctcacgacctgtaaa
tga
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