Alnus glutinosa (common alder): 133875993
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Entry
133875993 CDS
T10577
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3-like
KO
K14829
pre-rRNA-processing protein IPI3
Organism
aglu Alnus glutinosa (common alder)
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
aglu03009
]
133875993
Ribosome biogenesis [BR:
aglu03009
]
Eukaryotic type
Pre-60S particles
5-FMC complex
133875993
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Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_WDHD1_1st
WDR55
Beta-prop_EML
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
NBCH_WD40
Beta-prop_SCAP
Beta-prop_IP5PC_F
WD40_MABP1-WDR62_1st
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_IFT140_1st
WDR90_beta-prop_4th
Beta-prop_WDR19_1st
Beta-prop_SPT8
WD_LRWD1
Beta-prop_DCAF4
VPS8_N
Beta-prop_WDR75_2nd
Beta-prop_IFT122_1st
Motif
Other DBs
NCBI-GeneID:
133875993
NCBI-ProteinID:
XP_062170271
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Position
8:1737926..1742724
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AA seq
495 aa
AA seq
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MQIMGKGRDALVVCSDKSMGIGITIWDVDTGDHLLHIPTCASPSHGLLCLRNHFLVASQI
HRHGSVGGGAIFIWALNKPQLPLRSYPVEAIGPLSCTKDGIYLAGGALSGNAYLWEIANG
RLLKTWHAHDKSLNCLLFSNDDSLLISGSNDGMICVWSVISLLDTADSGSLPSLLHYSSE
HRSSVTGLLNTSGSSSSVLVSSSLDGTCKVWDFVSGRLIQTQVYPLAITAIVLDPGEQLL
FCGSVDGRIFVNRLDIGLLEDPFFVAEDQPVVLKEHNGAITALAFSESGLISASEDCTIC
MWDVVNLVIIRKFDHRKGAVTNMTVIPQSSLLSVSNHQRVSNGFYVSLLDKYPQPANSSK
GRITLPSSCCSFKENQISLDFRSTDSLNQHISDLELPRFSFSALEYGQKDGTPAAMQMKV
ETCIENRIWATRMTKHVMEMNKHLQSRLLDLMQCRLLWPTEIDTPTSRKRKMLKIESPLL
QGEEEPQSSTKFHDE
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atgcaaatcatgggtaagggcagggacgccttggtggtttgcagtgacaagagcatggga
ataggcataacaatatgggatgtggacacaggggatcatcttctccacataccaacctgc
gcatccccttctcatgggttattgtgcttgagaaaccacttccttgtagcttcccagatt
cacagacatgggtctgttggtggcggagccatcttcatctgggcattgaataagcctcaa
ctgcctcttcggagttatccagtggaggccattgggccgctttcttgcacaaaggatggc
atatatcttgctggcggggcactttcaggaaatgcttatctttgggagattgctaacgga
agattgctcaagacttggcatgctcatgacaaatctttgaattgcttgctgttttctaat
gatgattctcttctcatttctgggtcaaatgatggtatgatctgtgtgtggtctgtaatt
agtttgctagacacggcagattctggaagcttgccttcgttgttacattattcatcagag
catagatcctctgttactggtctgttaaacacatcaggcagctcaagttcagttctagta
tcaagctcccttgatggcacttgcaaggtttgggacttcgtctcaggaaggcttatacaa
actcaagtttatccactggcgataactgcaattgttcttgacccaggggagcagctcttg
ttctgtggaagtgtggatggaagaatttttgtcaacaggcttgatattggactattggag
gaccctttctttgttgcagaagaccaaccagttgtgctaaaagaacacaatggagccata
actgcattggccttcagtgaatcaggtctgatatctgcatctgaggactgcaccatttgc
atgtgggatgtagtcaacttggtgatcatccggaaattcgaccatcgaaaaggggcagta
actaatatgacagtgattccgcagtcctcactgctttctgtatcaaaccatcagagagtt
tcaaacgggttctatgtttctttgcttgacaagtatcctcagccagccaactcatccaag
ggaagaatcactctcccttcctcatgctgttcctttaaagaaaatcagatttcccttgat
ttccgaagcactgattcattgaaccagcacatatctgatttggagttgccaagattctct
ttctctgccttggaatatgggcagaaagatggaactccagcagcaatgcaaatgaaggtg
gaaacttgcatagagaatcggatttgggccacaagaatgacaaagcacgttatggagatg
aataagcatttgcagtcacgtttacttgacttgatgcagtgcagattattatggcctact
gagattgacacacccacatctagaaaaagaaaaatgctcaagattgagagtccacttcta
cagggggaggaggaaccacagtcctctactaaatttcatgatgaataa
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