Alnus glutinosa (common alder): 133876025
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Entry
133876025 CDS
T10577
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
aglu Alnus glutinosa (common alder)
Pathway
aglu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133876025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aglu03019
]
133876025
Enzymes [BR:
aglu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
133876025
Messenger RNA biogenesis [BR:
aglu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
133876025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
DUF5580
PHD_ash2p_like
Motif
Other DBs
NCBI-GeneID:
133876025
NCBI-ProteinID:
XP_062170312
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All DBs
Position
8:complement(28983799..28989248)
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AA seq
721 aa
AA seq
DB search
MNTHHRATRRALSRAFSRALASPFSTSSHKPSGAAFPLKHVTRSNFEPALGELRRHVRAA
DFVAIDLEMSGVTSAPWRESLEFDRSDVRYLKVKDSAEKFAVLQFGVCPFRWDPSTNSFV
AHPHNFYVFQRHELPVDGPSFEFLCQTTSIDFLARYQFDFNVCIHEGISYLSRRQEHEAQ
RHLNGAYEDELSETWCNLKEVRDVQLNRMADILFSERIKNRFSEWRDGLLQDRNGGFQPQ
WNSTDSKQQFQTIFFKMRPALSLTGFTSHQFRLIQWVINKHFEDLTYVRVTGENLCSQQL
VVYTESKDDIDLLMKEVKDERRRGAELKIQSAIGFRHVIDLLSSEQKLIVGHNCFLDIAH
VYSKFLGPLPLTAEEFVSSINKYFPHIVDTKILLNANYVLQQRMKKSSTSLSSAFARLCP
HIALGSESKGLAFLQPVQVEVQVDDMRTSNWNAGAKHEAGYDAFMTGCIFAQACSHLGID
FKLHSPSENLAHNEKLCKQINHLYLSWTNGDIIDLSTGKIEEPLGTKNPKKQYSKILFEN
IVLIWGFPSKLKAQEIRQCISKVFGPTSVTSVYHLDESAVFVQFSKTGFVSDFLVLKETL
ERSDGPISVLHPLAKLLEGGNTRAASYEIYKEICSSPISEVLFADQAEAVGIKWKTEVIE
PKLAGESQENQSFREDEEISNVPKSTENSKHKVEKDILSGHYEIIDSLYTAEANQVRANN
L
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgaacacgcaccaccgtgccaccaggagggcactctcacgtgcgttctcacgtgcctta
gccagcccattctcaacctcgtcgcataaaccctccggcgccgcctttcctctgaagcac
gtgacgaggtcgaacttcgagccggcgctgggcgaactgcggcggcacgtgcgggcggcg
gacttcgtggccatcgacctggagatgagcggcgttaccagcgcgccgtggcgcgagtcc
ctggagttcgaccgctccgacgtgcgctacctcaaggtcaaggactccgccgagaaattt
gctgtcctgcagttcggcgtctgccccttccgctgggacccttccaccaactccttcgtc
gctcacccgcacaatttctatgtgtttcagcgtcacgagctgccggtcgatggcccttct
ttcgagtttctctgccagaccacgtccattgacttcttagctagataccagtttgatttc
aatgtatgcatacatgaaggaatatcttatttatccagacgacaagaacatgaagcacaa
agacatttgaatggggcatacgaggatgagttatcagaaacatggtgtaacctgaaagaa
gttagagatgtacaattgaaccgcatggctgacattctgttcagtgaacgaattaagaac
agattcagcgaatggcgcgatgggttattacaggatagaaatggagggttccaacctcag
tggaactcaactgactcaaagcaacaatttcaaaccattttctttaagatgcgtccagct
cttagtctgactgggtttacttctcatcagtttaggttaattcaatgggtcattaacaag
catttcgaagatcttacttatgttcgtgtgactggtgagaatttatgctcacaacaacta
gtagtgtatacagaatccaaggatgacatagacttgcttatgaaagaggtgaaagatgag
cgtcgccgaggagcagagttgaaaatccaatctgcaattgggtttcgccatgttattgac
ctcctttcctcagagcagaagttgattgttggtcacaattgctttcttgatattgcacat
gtatacagcaaattcttaggtcctcttcctttgactgcggaagaatttgtctcctccatt
aacaagtactttccccacattgttgacaccaaaatactcttgaatgccaattatgtactc
caacaacggatgaagaagtccagcacatcactatcttcagcatttgcccgcttgtgtcca
catattgctcttggttctgaaagcaaggggctggcttttctccaacctgtgcaagtggag
gttcaagtggatgatatgaggacctccaactggaacgctggagccaagcatgaagctggg
tatgatgcttttatgacaggatgtatctttgcccaggcttgcagtcatctaggcattgat
tttaaactccattcaccgtctgaaaatttagcccataatgaaaagctctgtaagcaaatc
aaccatttatatctcagttggactaatggagacattattgatttaagtactggtaagatt
gaagagcctttgggaactaagaatcccaaaaagcaatactcaaagattctgtttgagaac
attgttttaatctggggattcccatccaaactcaaggcacaggagataagacaatgcatc
tctaaagtcttcggcccaacctctgtaacttctgtctaccacttggatgaatctgcagtg
tttgttcaattcagcaagacagggtttgtctctgactttctggttctcaaggaaacttta
gagagaagtgatggtccaatctcagttttgcatcctcttgcaaaacttttggaaggtgga
aacactcgtgccgctagttatgaaatttataaagagatttgcagctcacccatttctgaa
gtcttgtttgccgatcaggcagaggctgttggtattaaatggaagactgaagtgatagaa
cccaagctagcaggggagagccaagaaaatcaaagttttagagaagacgaagaaataagt
aatgttcctaaatctaccgaaaattccaagcacaaagtggaaaaagatatattatctggc
cattatgagatcatagattctttatataccgccgaagccaatcaggttagagctaataac
ttgtaa
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