Alnus glutinosa (common alder): 133877277
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Entry
133877277 CDS
T10577
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
aglu Alnus glutinosa (common alder)
Pathway
aglu03030
DNA replication
aglu03410
Base excision repair
aglu03420
Nucleotide excision repair
aglu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
133877277
03410 Base excision repair
133877277
03420 Nucleotide excision repair
133877277
03430 Mismatch repair
133877277
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aglu03032
]
133877277
03400 DNA repair and recombination proteins [BR:
aglu03400
]
133877277
DNA replication proteins [BR:
aglu03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
133877277
DNA repair and recombination proteins [BR:
aglu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
133877277
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
AAA_30
AAA_22
AAA_19
PTCB-BRCT
RCF1-5-like_lid
Rad17
Gp44_lid
BRCT_2
nSTAND3
Sigma54_activ_2
Zeta_toxin
AAA_24
AAA_14
AAA_assoc_2
RuvB_N
AAA_16
AAA_5
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
133877277
NCBI-ProteinID:
XP_062171501
LinkDB
All DBs
Position
9:10396217..10425033
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AA seq
958 aa
AA seq
DB search
MSDNKQGDIRKWFMKSHDKGNGKESKPANPAPTNSERQVHGGQENSARRKTSKYFATDKQ
KPKEEKETEELPAKRKTQKDSDESLKSPPSKKVHKVDVDDDDDFVLPSSRKNSVDVTPSK
KLKLGSGRGVAQKPVDVEENEEDDDKNIETPLRSGGRGRGGRGSSAAPAGGRGRGGGRGG
FMNFGERKDPPHKGEKEAPEGAPDCLDGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV
SKKTNYLLCDEDIGGQKSKKAKELGTAFLTEDGLFDMIRASKPGKALAQEESKKPLDKVA
PLPKKSPQKLEAKKDKISNSLTTKVASPAKRKTQTAEKNALTWTEKYKPKVPSDIIGNQS
LVKQLHDWLAHWNEQFVDTGNKKKGKKQNDSGAKKAVLLSGGPGIGKTTSAKLVSQMLRF
QAIEVNASDSRGKADAKIEKGIGGSNANSIKELVSNEALSSNMDRSKHPKTVLIMDEVDG
MSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAKRLV
QVANAEGLQVKEIALEELAERVHGDMRMAINQLQYMSLSMSVIKYDDIRQRLLTSAKDED
ISPFTAVDKLFGFNAGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSVGKDDNGIKRM
SLIARAAESIGDGDIFNVQIRRYRQWQLSQSGSLASCIIPAALLHGQRETLEQGERNFNR
FGGWLGKNSTMGKNLRLLEDLHVHLLASRESSSGRKTLRVEYLTLLLKRLTGPLRVLPKD
EAVQNVVEFMNIYSISQEDFDTIVELSKFQGHQNPLEGIQPAVKAALTRAYKEGSKSRMV
RAADLVSLPGMKKAPKKRIAAILEPSDDGLVDGSGETLAENEEENSSDTEELEGTANGEK
LQLELQSLNSKGVEVKLDLKGTGNSSAKKTSAGRGKVGSGPTEKKGARGSGTGAKRKR
NT seq
2877 nt
NT seq
+upstream
nt +downstream
nt
atgtctgataataagcagggagatataagaaaatggtttatgaagtcacatgacaagggc
aacggcaaggaatccaagcctgcaaatcctgccccaaccaattcagagagacaggtgcat
ggaggccaagaaaattcagccaggaggaaaactagcaaatattttgctactgacaaacaa
aagccgaaagaagagaaggaaacagaggagcttccagcaaaaagaaagactcagaaggat
agcgatgaatcactgaaatccccaccctctaaaaaagttcacaaagttgatgttgatgat
gatgacgactttgtcttgcctagttctaggaagaactcagttgatgtgactcctagcaag
aagttgaagcttgggtcgggtaggggagtcgcacagaaacctgtagatgttgaagaaaat
gaagaggatgatgataaaaatattgaaactcctcttaggtctggtggaaggggtcgtggt
ggaagaggttcatcagcagcaccggctggtggaagaggtagaggtggtggacggggtgga
tttatgaacttcggagaaaggaaagatcctccacataaaggagaaaaggaagcccctgag
ggtgctcctgattgtttagatggtctaacttttgtaattagtggtactcttgacagtctg
gagcgtgaagaagctgaagatttgattaaacgccatggtggtcgtgttactggatctgtc
agcaagaaaacgaattatcttttatgtgatgaagatattgggggacagaaatccaaaaaa
gccaaagagctgggtactgcctttctcactgaggatggattgtttgatatgatccgtgca
tcaaaacctggaaaagcacttgcacaagaagaatcaaagaaaccattagataaggttgcg
cctctaccaaagaaaagtccccagaagttagaagcaaagaaagataagatcagcaattcc
ttgacaacgaaagtagcctccccagctaagcgtaaaactcaaactgctgagaagaatgct
ttgacatggacagaaaaatataagccaaaggttccaagcgatattattggaaatcaatcg
ctggttaagcagctccacgactggctggcacattggaatgagcaatttgttgatactgga
aataagaaaaagggcaagaaacaaaatgattctggtgccaaaaaagctgtgctgttaagt
ggaggccctggtataggaaaaactacgtcagcaaagttggtcagtcagatgctcaggttc
caggcaatagaggtaaatgctagtgacagtcgtgggaaggctgatgccaaaattgaaaaa
ggaattggtggaagcaatgcaaattctataaaggaacttgtgagcaatgaggccttgagt
agtaacatggatcggtcaaagcatcctaaaactgtgctgattatggatgaggttgatggg
atgtctgctggagatagaggtggaattgctgaccttattgctagcatcaagatttccaaa
attcctattatatgcatttgcaatgaccgatacagtcagaaactgaaaagtcttgtgaac
tactgtttgcttctcagctttcggaaacctacaaaacaacagatggcaaagaggttagtg
caagttgcaaatgcagaaggccttcaagttaaggagattgctcttgaggaacttgcagaa
agagttcatggagatatgcggatggcaataaaccaattgcagtacatgagcctctctatg
tcagtcattaaatacgatgacattaggcagcgtcttcttaccagtgcaaaggatgaagat
atttcaccattcaccgctgttgacaagctttttggttttaatgcggggaagttgaggatg
gatgagcgcattgacctgagcatgagtgatcctgatttagtccctcttcttattcaggaa
aattatattaattataggccaagttctgttggtaaggatgacaatggaatcaaacgtatg
agcttgattgcccgcgctgctgaatctattggtgacggggatatattcaatgtacagatt
cgacgatatcgacagtggcagctctctcaaagtggttcccttgcatcgtgcattattcct
gccgcattattgcatgggcagagggaaacacttgaacagggagagcggaactttaataga
tttggagggtggctgggaaagaactcgacaatgggcaaaaatttgaggcttttggaggat
ttgcacgttcatcttcttgcttcccgtgaatctagttcagggaggaaaaccctgcgagtt
gaataccttactcttcttctgaaacgattgaccgggccactgcgagtgctgcctaaggat
gaagctgttcaaaatgttgttgagtttatgaatatttactcaattagtcaggaggatttc
gatactatagtggagctgtcaaaatttcaggggcatcaaaatcctctggaaggcatacag
cctgctgtgaaggccgctctcactagagcttacaaagaaggaagcaaatcaagaatggta
cgagctgcggatttagtctcgcttcctggtatgaaaaaagctcccaaaaagcggattgca
gcaattctagagccatctgatgatggattagtagatggcagtggtgaaacattggcagaa
aatgaagaagaaaactcgtcagatacagaggagttggaaggcactgccaatggtgagaag
ctgcagttggaacttcaaagtttgaattcaaaaggagtggaagtgaaattggatctgaag
ggcacaggaaattcaagtgctaagaagacatcagctggcagaggaaaagttggctctgga
cctacggagaagaaaggtgcgcgaggttcagggactggtgccaagagaaagagatga
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