Alnus glutinosa (common alder): 133877597
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Entry
133877597 CDS
T10577
Name
(RefSeq) zinc finger CCCH domain-containing protein 49-like
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
aglu Alnus glutinosa (common alder)
Pathway
aglu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133877597
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aglu03041
]
133877597
Spliceosome [BR:
aglu03041
]
Complex B
Other components
Prp19-related factors
133877597
Complex C
133877597
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
zf-CCCH_RBM22
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH_12
RRM_occluded
zf-CCCH_3
zf-CCCH
zf-CCCH_10
RRM_YTH1
zf-CCCH_4
RRM_3
zf-CCCH_PARP12
Motif
Other DBs
NCBI-GeneID:
133877597
NCBI-ProteinID:
XP_062171950
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Position
9:25516673..25521703
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AA seq
516 aa
AA seq
DB search
MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTRADFDKECKICTRPFTVFRWRPGR
DARFKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE
EHDRRARAGIDYESSFGKARANDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGAECPYR
HEMPITGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPDDESIKTLYVGGLNERVT
EQDLRDNFYAHGEIESIRMVPLRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGR
PQAPKPDLEGSDEARQQAAVAHSGMLPRAIISQQQSQLQPQDQNQPMHYFNIPPPPPPQQ
ERAYYPSMDPQRMGALVPSHEGPSNGPSGSGENKSGSEKQQQAQRYAYQGMPPPPGQYHH
QFYPPPYGYMPPMSSYQQQYPPQYHSAMLPPQPPPTNQHYQHSAPSATHLGSAPPGSAAH
AGSTPSGSAQPGSSPAGSTPPASGPSGSSTPGSSQQ
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atggcgcataggttgcttagagatcttgaggccgatggctgggaacgctccgattttccc
atcatctgcgagtcttgcctcggtgacaacccctacgttcgcatgacgagagccgacttt
gataaggagtgcaagatttgtacacggccatttacagtttttaggtggaggcctggtcgt
gatgcgagatttaaaaaaactgagatttgccagacatgcagcaagttgaaaaatgtttgc
caagtttgccttctggatctcgaatacggtttgccagttcaggttcgagacactgcactg
tccatcaattccaatgatgccattcccaagagtgatgtgaatagagaatattttgctgag
gagcacgaccgcagggctagagctggtatagattatgagtcgtcatttggaaaagctcgt
gcaaatgacaccattctgaagcttcagagaacaacaccgtattacaaaagaaacagagca
catgtctgcagtttctacataaggggagaatgcacaagaggtgctgagtgcccttacaga
cacgagatgcccataactggggaattgtcacagcagaatattaaagatcgttactacgga
gtgaacgatccggttgcactgaagctactcaacaaggcaggagagatgccttctctggag
cctcctgacgatgagagcattaagaccctttatgttggtgggcttaatgaaagggtcact
gagcaggacctgagggataacttctatgctcatggtgaaatcgaatccataaggatggtg
cccctacgagcttgtgcttttgtaacctacacaacaagagaaggcgcagagaaggctgca
gaagagctctctaacaaactggtcataaagggcctgaggctgaagcttatgtggggtaga
cctcaagcaccaaaaccagatttagaaggctcagatgaagcaaggcagcaggcagcggtg
gctcatagtgggatgttgcctcgggcaattatatcccagcagcagagccaattacagccg
caggaccaaaaccaaccgatgcattacttcaatattccacctccacctccgcctcagcag
gagagagcctattatccatcaatggatcctcaaagaatgggtgcccttgttccatcccat
gaggggccttctaatgggccctctgggtcaggtgaaaacaaatctggttcagagaaacag
caacaggcacagcgttatgcctatcaaggtatgcctccgccaccggggcagtatcatcat
cagttctatcctcctccatatggatatatgccgccaatgtcctcttatcagcagcagtac
cctccacaatatcattcagcaatgctccctccacagcctccaccaacgaaccagcattat
cagcattcggcaccatctgctactcaccttgggtctgcaccaccaggatctgcagctcac
gctgggtctacaccatcagggtccgcacagccggggtctagcccagcaggttctacacct
cctgcgtctggaccatcagggtcctcaacacctgggtcatcgcagcagtga
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