Alnus glutinosa (common alder): 133877953
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Entry
133877953 CDS
T10577
Name
(RefSeq) sm-like protein LSM7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
aglu Alnus glutinosa (common alder)
Pathway
aglu03018
RNA degradation
aglu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133877953
09123 Folding, sorting and degradation
03018 RNA degradation
133877953
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aglu03019
]
133877953
03041 Spliceosome [BR:
aglu03041
]
133877953
Messenger RNA biogenesis [BR:
aglu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133877953
mRNA degradation factors
5'-3' decay
Lsm complex
133877953
Spliceosome [BR:
aglu03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
133877953
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Hfq
Motif
Other DBs
NCBI-GeneID:
133877953
NCBI-ProteinID:
XP_062172399
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All DBs
Position
9:2529876..2536506
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AA seq
99 aa
AA seq
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MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKT
TDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFLQADGV
NT seq
300 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggacgcaaagaaacggttttggatcttgccaaatttgttgataagggtgtccaa
gtcaagcttactggtggacgacaagtcacagggaccttgaaaggttatgaccagttgctg
aacctcgtccttgatgaagccatagaattcttgagagatccggatgaccctctgaagacg
accgatcagactagacgccttggcctaatagtatgccggggtactgctgtgatgcttgtt
tccccaactgatggtactgatgagattgcaaaccccttccttcaggcagatggggtgtag
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