Alnus glutinosa (common alder): 133877970
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Entry
133877970 CDS
T10577
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20-like isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
aglu Alnus glutinosa (common alder)
Pathway
aglu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133877970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aglu03041
]
133877970
03009 Ribosome biogenesis [BR:
aglu03009
]
133877970
Enzymes [BR:
aglu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133877970
Spliceosome [BR:
aglu03041
]
Complex A
U1 snRNP components
U1 related factors
133877970
Complex B
133877970
Ribosome biogenesis [BR:
aglu03009
]
Eukaryotic type
Pre-60S particles
Helicases
133877970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Terminase_6N
PRAI
Motif
Other DBs
NCBI-GeneID:
133877970
NCBI-ProteinID:
XP_062172419
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All DBs
Position
9:28608107..28617591
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AA seq
555 aa
AA seq
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MSYVPPHLRNSGSAAATTTTTTTTTTTTRTSSLTLDTDRTKLSNSSSFSNASRRGSSSLR
LAVPEPVFPPWKPSDRVLRMNPEQVEDVRLRLNVDVTVTLDSPPAPAPVESFTDMRLHPS
IMKDIAFHEYTTPTSIQAQAMPVALSGRDMLGCAETGSGKTAAFAIPMIEHCLAQPPVRR
GDGPLALVLAPTRELAQQIEKEVKAFSRSLESLKTAIVVGGTNISEQRFELKAGVDVVVA
TPGRFIDHLQQGNTYLSRISFVVLDEADRMLDMGFEPQIREVMRNLPEKHQTLLFSATMP
LEIEALAQEYLTNPVQVKVGKVSSPTANVSQILKKVSASEKIDGILAMLVEEASQAERSG
HPFRLTIVFVERKTRCDEVTEALVAQGLHAVALHGGRSQSEREAALHDFRNGSTKILVAT
DVASRGLDVTGVAHVINLDLPKTMEDYVHRIGRTGRAGSMGQATSFYTDHDMVLVAQIKK
AIADVESGNPMAYATGKVARRKEREAAAALKEARTAVSKLSMNGSTAITIEDKYRFMIAA
SDTKGEGAADSAWDD
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtatgtgcctccgcacctcaggaactcaggctcagcggctgccacgacgacgacg
acgacgaccaccaccaccaccaccagaacctcttctctaaccctagacactgaccgcacc
aagctctccaattcctcaagcttctccaatgcctctcgccggggctccagctctctccgt
ctcgccgtgcccgaacccgttttccctccgtggaaaccctccgatcgcgttctacgcatg
aatcccgagcaggtcgaagacgttcggttgcggctcaatgtcgatgtcactgtcactctg
gactcccctcctgctcctgcgcctgttgagtctttcacggatatgcgcttgcatccaagc
atcatgaaggatatagcatttcatgaatacactacgcctacttctattcaggctcaggcc
atgcctgtggccctcagtggaagggatatgttgggttgtgctgaaacgggaagtggcaaa
acggctgcattcgctattccgatgatagagcattgcttggctcaacctcctgttcgccgt
ggtgatggacctttggcattggttctggctcctactagggagctggcccagcaaatagaa
aaagaggttaaagcttttagtagatctctcgagtcactcaaaactgcaatagttgtgggt
ggaacaaacatttccgagcagaggttcgagctgaaggcgggagtggatgtggtagttgct
actcctggaaggtttattgatcatttacagcaagggaacacttacctctctagaatttca
tttgttgttttggatgaagctgatagaatgcttgacatggggtttgaacctcagataaga
gaggtgatgcggaaccttccagaaaagcatcagactttgctgtttagtgcaaccatgcct
ttggagattgaagcattagcacaggagtacttaactaacccggttcaagtgaaggttgga
aaagtgagtagcccaacagctaatgtatctcaaatattgaagaaggtttctgccagtgag
aagattgatgggattctagctatgcttgtagaggaagcatcacaagctgaaagatctggt
catccctttcgtttaactattgtgtttgtggaaaggaagacaaggtgtgatgaagtcacc
gaagctttggtagcacaaggtttacatgcagttgctcttcatggtggccgtagtcagagt
gaaagagaggctgctctacatgattttaggaatggctctactaaaattttggttgccact
gatgttgcatctcgtggtttggatgtcacaggagttgctcatgttataaatctggatctc
ccaaagacaatggaagattatgtacaccggattggaaggacggggcgtgcaggatcaatg
ggccaagctacttcattctacactgatcatgatatggtacttgtggcccagataaagaaa
gcaattgcggatgttgaatctgggaaccctatggcctatgcgactggaaaggttgcaaga
agaaaggagagagaagcagcagctgcactgaaagaagcaagaactgctgtgtccaaactc
tcaatgaatggatccactgcaataaccatcgaggataagtataggttcatgattgcagcc
tcagacactaaaggagagggcgctgcagatagtgcttgggatgattga
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