KEGG   Alnus glutinosa (common alder): 133878558
Entry
133878558         CDS       T10577                                 
Name
(RefSeq) THO complex subunit 4A
  KO
K12881  THO complex subunit 4
Organism
aglu  Alnus glutinosa (common alder)
Pathway
aglu03013  Nucleocytoplasmic transport
aglu03015  mRNA surveillance pathway
aglu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:aglu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    133878558
  09122 Translation
   03013 Nucleocytoplasmic transport
    133878558
   03015 mRNA surveillance pathway
    133878558
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aglu03019]
    133878558
   03041 Spliceosome [BR:aglu03041]
    133878558
Messenger RNA biogenesis [BR:aglu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     133878558
    TREX complex
     133878558
Spliceosome [BR:aglu03041]
 Complex C
  Other components
   EJC/TREX
    133878558
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    133878558
SSDB
Motif
Pfam: RRM_1 FoP_duplication Btz
Other DBs
NCBI-GeneID: 133878558
NCBI-ProteinID: XP_062173102
LinkDB
Position
9:22338917..22342330
AA seq 250 aa
MSTALDMALDDIIKSNKQSGSGARGRSRASAPGPGPARRIPNRAANRTGPYSTPKAPETT
WQHDLFMEENLGRASAIETGTKLYISNLDYGVSNEDIKELFAEVGDLKRYSIHYDRSGRS
KGTSEVVFSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIATPAAPPAANGTFGNSNGIP
RGGQGRAGAPGRPRGGGGGGGGGGGGGGGGGRSIGRGRGRGRGRGRGEKLSQEDLDADLE
KYHEEAKQKD
NT seq 753 nt   +upstreamnt  +downstreamnt
atgtcgaccgctttagacatggccctggacgatatcatcaagagcaacaagcagtccgga
tccggcgccagaggccgtagcagggcctccgcacccggtccgggacccgctcgccgcatc
cctaaccgcgccgccaaccgtacgggtccttattccacccccaaggcgccggagacgact
tggcagcacgatttgttcatggaagagaatttggggcgagcctctgccatagagaccggg
accaagctctacatatccaatctcgattatggtgtttccaacgaggacattaaggaactg
tttgctgaagttggtgacctcaaacgttattcaatccattacgacaggagcgggagatcg
aagggaacgtccgaagtagtcttctccagacgagcagatgctgtggctgctgttaagaga
tacaacaatgttcagcttgatgggaaaccaatgaagatagagattgtgggaacaaacatt
gcaacacctgctgcgcctccagcagctaatggcacttttggaaattcaaatgggattcca
agaggtggacaaggtagagctggtgcaccaggacggccacgtggcggcggtggtggcggc
ggcggcggtggcggtggcggcggcggtggtggccgtagcattggaaggggtcgtggacgt
ggacggggaagaggccgtggtgaaaagttatctcaagaagatcttgatgctgatctggaa
aagtatcatgaggaggcaaagcagaaagattga

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