Alnus glutinosa (common alder): 133879530
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Entry
133879530 CDS
T10577
Name
(RefSeq) THO complex subunit 1 isoform X1
KO
K12878
THO complex subunit 1
Organism
aglu Alnus glutinosa (common alder)
Pathway
aglu03013
Nucleocytoplasmic transport
aglu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133879530
09122 Translation
03013 Nucleocytoplasmic transport
133879530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aglu03019
]
133879530
03041 Spliceosome [BR:
aglu03041
]
133879530
Messenger RNA biogenesis [BR:
aglu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
133879530
Spliceosome [BR:
aglu03041
]
Complex C
Other components
EJC/TREX
133879530
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
133879530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Haemadin
Motif
Other DBs
NCBI-GeneID:
133879530
NCBI-ProteinID:
XP_062174088
LinkDB
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Position
10:complement(24562179..24588959)
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AA seq
608 aa
AA seq
DB search
MEVFKRAILQPGPPESFALQTVQEVVKPQKQTKLAQDENQLLENILRTLLQELVSSALQS
GEQIMMYGQSIDDGETTQGHIPRLLDIVLYLCEREHVEGGMIFQLLEDLTEMSTMRNCKD
IFGYIESKQDILGKQELFARGKLVMLRTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSE
RSAVNIKGVFNTSNETKYEKDPPDGLSIDFNFYKTFWSLQEYFCNPASLTPTTAKWQKFT
SSLTIVLNTFEAQPLSDEEGDANNLEEEASNFSIKYLTSSKLMGLELKDPSFRRHVLVQC
LILFDYLRAPGKNEKDLPSESMKEEIKSCEERVKKLLEMTPPKGKDFLHKIEHILEREKN
WVWWKRDGCPAFEKQPLEKKTVQDVTKKRRPRWRLGNKELSQLWKWSDQNPNALTDPQRV
RTPAIMEYWKPLAEDMDVSAGIEPEYHRKNSRVYCWKGLRFSARQDLDGFSRFTDHGIEG
VVPLELLPPDVRSKYQAKPNDKSKRAKKEEMKGAAPQLEENQIATPASEVDGEGIRADFE
SSAVQMDADATGTGNISQGGTPTPDEHQKQSSDTDVTQEAGQLEADAEVEAGMIDGETDA
EVDLDAVG
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atggaagtgttcaagagggccatactacagcctgggccacctgaaagttttgcactacag
acagttcaggaagtagtaaaacctcagaaacaaacaaaattagcccaagatgagaatcaa
ttgttagaaaatattcttcggacattgcttcaggaactggtgtcatctgcactacagtca
ggggagcaaataatgatgtatgggcaatcaattgatgatggggaaaccacccagggtcat
attcctcgtcttcttgacattgtgctgtatctttgtgagagagaacatgttgaaggtggc
atgatatttcaactgttggaagacttgacagaaatgtctacaatgagaaactgcaaagat
atttttggttatatagagagtaaacaagatattttagggaagcaagagcttttcgctcgt
gggaaacttgtgatgttgagaacatgcaatcaacttcttcgtcgtctatcaaaggcgaat
gatgtggtgttttgtggaagaattctcatgtttttggcacatttttttccattgtctgaa
cgctcagctgtgaatataaaaggagttttcaacacatcaaatgaaacaaaatatgagaaa
gaccctcctgatggcctttctattgatttcaacttttataagactttttggagtttacag
gaatacttttgcaaccctgcttctctaactcctactactgctaaatggcagaaatttaca
tccagcttaacgattgtcttgaatacctttgaagctcaaccattaagtgatgaagaaggg
gacgctaataacttggaggaagaggcatcaaatttcagcataaaatatcttacaagcagt
aaactgatgggtttagagttgaaggatccaagttttcgccgccatgttcttgtgcagtgc
ctcatattgtttgattatctgagggcccctgggaagaacgagaaagatttgccatctgaa
agcatgaaagaagaaataaaatcatgcgaggagcgtgtgaaaaagctgcttgaaatgact
ccacctaaagggaaggattttcttcacaaaattgagcacatattagaacgtgagaagaat
tgggtgtggtggaaacgcgatggttgcccagcatttgaaaagcaaccattagagaagaaa
acagtacaagatgtaactaaaaaacgtagaccaaggtggagactgggaaataaagaactc
tctcagttgtggaagtggtcggatcagaatccgaatgctttgaccgatcctcaacgtgtc
agaactcctgccatcatggaatactggaaacctttggctgaagatatggacgtatcagct
ggaatagaacctgaatatcaccgcaaaaatagtcgggtttattgttggaagggtcttcga
ttttctgcacgtcaggacttggatggattttctagattcaccgatcatggtatagaaggg
gttgtgcctctagaacttttgccacctgatgttaggtccaaataccaagcaaaaccaaat
gacaagtctaagcgtgctaaaaaggaagaaatgaagggtgctgcaccacaacttgaggaa
aatcagattgctacacctgcaagtgaagttgatggtgaaggaatcagagctgattttgaa
tcctcagcagtacaaatggatgctgatgccacgggaactggcaatatatcccaaggtggc
actccaacaccagacgaacatcagaagcaaagctccgacactgatgttactcaagaggca
ggtcagttagaagctgatgctgaggttgaggcagggatgatagatggagagactgatgca
gaagttgatttagatgctgttggctga
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