Alnus glutinosa (common alder): 133879609
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Entry
133879609 CDS
T10577
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
aglu Alnus glutinosa (common alder)
Pathway
aglu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133879609
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aglu03019
]
133879609
03012 Translation factors [BR:
aglu03012
]
133879609
Enzymes [BR:
aglu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
133879609
Messenger RNA biogenesis [BR:
aglu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
133879609
Translation factors [BR:
aglu03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
133879609
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
nSTAND3
ATPase
AAA_19
T2SSE
AAA_16
PhoH
ABC_tran
AAA_23
Myosin_head
Motif
Other DBs
NCBI-GeneID:
133879609
NCBI-ProteinID:
XP_062174218
LinkDB
All DBs
Position
10:4258028..4290201
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AA seq
1156 aa
AA seq
DB search
MHKSRPVAGFLFRYSKSISGRHAALSCLHSHHHRRSLLSLLLLLPSSSSALSNGRVFVAK
RGLCGYAAEQFSDDEYECDFENHTASSSVANIDEWKWKLSLLQRSEKDQEIVSRDKRDRR
DYEQISNLAKRMGLYSEIYGKAVVASKVPLPNYRPDLDDKRPQREVVIPLSLQRRVEGLL
QEHLDRVQLSSGKVNDGLDDAKTNDQVEDVNLDENADAFLDGSVMEKVLQRRSLRMRNMQ
RAWQESPEGKKMLDFRRSLPAFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESE
IESGRGAFCSIICTQPRRISAMSVAERVSAEKGEPLGETVGYKVRLEGMKGKNTHLLFCT
SGILLRRLLSDRDLNGITHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLVLMSATLNA
DLFSSYFEGAPTFHIPGFTHPVRANFLEDVLEKTGYKLTSFNQIDDYGQEKVWKTQRQLM
PRKRKNQITALVEDALSKSSFESYSSRARDSLACWMPDCIGFNLIEAVLCHICRKERPGA
VLVFMTGWEDISCLRDQLKAHPLLGDPNRVLLLTCHGSMATSEQKLIFENPPPNVRKIVL
ATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPG
ECYHLYPKCVYEAFSEYQLPELLRTPLNSLCLQIKSLQVGSIGNFLSAALQPPESLAVQN
AIDFLTKIGALDENENLTNLGKFLSILPVDPKLGKMLIMGSIFRCFDPVLTIVSGLSVRD
PFLLPQDKKDLAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSAQTL
QAIHSLRKQFSFILRDSGLVDADASNNNRLSHNQSLVRAIICSGLFPGIASVVHRETSMS
FKTMDDGQVLLYANSVNARYQTISYPWLVFGEKVKVNTVFIRDSTGVSDSILILFGGALS
HGVQAGHLKMLEGYVDFFMDPNLAECYSKLKEELDKLVQKKLEDPSLDMHKEGKYLMLAV
QELVSGDQCEGRFVFGRESKKPRESNDSRFTKDGTNPKSLLQTLLMRAGHSPPKYKTKHL
KTNEFRALVEFKGMQFVGKPKKNKQLAERDAAIEALAWLTHTSDNRRDEDDNSPPDVTDN
MLKLLGKRRRSKRRSG
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgcacaagtcgaggccagtagcgggtttccttttccgatactccaagtcaatctccggc
cgtcacgccgctctttcatgcctacatagccaccaccaccgccgctctttgctcagtctc
ctcctcctcctcccctcttcttcttctgctctatctaatgggagagtgttcgttgcaaag
cgaggcctctgcgggtacgccgccgagcagttctccgacgacgagtacgagtgcgatttc
gagaaccatacggcatcatcttcagtggccaatattgacgagtggaaatggaaactcagc
ctgctgcagcgtagtgaaaaggatcaagagattgtatcgagagataagagagataggaga
gactatgagcagatctctaaccttgccaaaagaatggggctctacagtgaaatttacgga
aaagcggttgttgcaagcaaggttcctctccctaactacaggccagatttggatgacaag
cggccacaaagggaggtggtaatcccgctaagcttgcagaggagggtcgagggtttacta
caggaacaccttgatcgagtccaattaagttctggaaaggtcaatgatggtttagatgat
gctaaaaccaatgatcaggttgaagatgtgaatctggatgagaatgcagatgctttccta
gatggatccgttatggaaaaggttcttcagaggaggagtttgcgaatgcgcaatatgcaa
agagcttggcaggaatcacctgaaggcaagaagatgctggacttccgaagatctctaccg
gcattcaaggagaaagaaaggctgcttcaagcaatagcgcgaaatcaggtgatagtaata
tctggggagactggatgcggtaagaccactcagcttccacaatatatattagagtcagaa
atagaatctggtcgtggagcattctgtagcataatctgtacacagcctcgaagaatatct
gccatgtctgtagcagaaagagtgtctgcagagaagggagagcctcttggtgaaacagtt
ggctataaagttcgattagagggaatgaaaggaaaaaacacccatctgcttttttgtacc
agtggtattttacttcggcggttgctgagtgatcgtgacctgaatggtataacccatgtt
ttcgttgatgaaattcatgagcgaggcatgaatgaagacttcctattgattgtgttgaag
gatcttcttccacgccgtcgggatttgcgattggtcttaatgagtgccaccctgaatgct
gacctattttccagttattttgaaggagcaccaacatttcacattcccggctttacgcat
ccagtgagagcaaactttttagaagacgtacttgaaaagacagggtataagttgacctct
ttcaaccaaatcgatgattatggccaagagaaagtgtggaaaacacaaaggcagctaatg
ccacggaaaaggaaaaaccagattactgctcttgttgaggatgctcttagtaaatcaagc
tttgagagttacagctccagggcaagagattctctagcatgttggatgcctgattgcata
ggatttaatcttattgaggcagttttgtgtcatatatgccggaaggaacgaccaggtgct
gtcttagtattcatgactggctgggaagatattagctgtttgagagatcagctaaaagct
catcccctgttaggagatcccaacagggttctgcttctaacatgccatgggtcgatggcg
acatctgaacagaaacttatatttgagaatccaccaccaaatgtccgtaaaatagttctt
gctacaaatatggcagaggcaagcattacaatcaatgatatagtttttgtagttgattgt
ggaaaagcaaaagagactacttatgatgctttgaataatacaccttgtcttctaccttct
tggatatcacaagcatctgcacggcaaagaaggggtagggctggtcgtgtgcagccagga
gaatgttaccacctttaccccaaatgtgtgtatgaagctttctccgaatatcaacttcct
gaacttttgagaacccctttgaactctctctgcttgcaaattaaaagtttgcaggttgga
agtataggaaatttcttgtcagctgctctgcagccaccagaatcactggctgtacaaaat
gccattgattttctgacaaagattggggcactagatgagaacgaaaatctgacaaatctt
ggaaagtttctgtccattcttccagtggatccaaagcttgggaaaatgctaattatgggt
tctatctttcgttgctttgatcctgttcttacaatagtatctgggcttagtgtcagggat
cctttccttttgccccaagacaaaaaggatttagcagggacagcaaagtctagattttct
gcaaaagattacagtgatcatatggcactggttcgtgcgtatgaaggatggaaagatgca
gaaagagaaggatctgcatacgagtattgctggaggaatttcctctctgcccaaacactt
caggctatccattctcttcggaagcagtttagcttcattttgagagattctggcttggta
gatgcagatgcaagcaataacaacagattaagtcacaaccagtcattggttcgtgcaatt
atatgttctggcctttttcctggcatagcatctgtagtgcacagagagacgtccatgtct
ttcaaaacgatggatgatggccaggttttactctatgcgaattctgtcaatgctcgttac
cagacaatttcttacccatggctagtctttggtgaaaaagtgaaggtgaatacagttttc
atacgcgattccactggcgtatctgattcaatactgatcctttttggtggtgctctcagc
catggtgtacaggctgggcatttgaaaatgttggaagggtatgttgactttttcatggat
cctaatttggcggaatgctactcgaagctcaaggaagaacttgataagcttgtacagaag
aagcttgaagatcctagccttgacatgcataaggagggaaagtaccttatgcttgccgta
caagagcttgtgtcaggggaccaatgtgaagggagatttgtatttggccgtgaaagcaag
aagcctagggagtctaatgacagcaggttcacaaaagatggaacaaatcctaagagcttg
ctacaaacactgttgatgagagcagggcactcccctcctaaatacaaaaccaagcacctt
aagacaaacgagttcagggctctggtagagttcaagggaatgcaattcgtagggaaaccc
aagaaaaacaagcagcttgcagagagggatgctgctatagaggcattggcctggttgact
catacctctgacaacagaagggatgaagacgataactctccgcccgatgtcactgacaac
atgttgaaacttcttggaaaacggagaagatcaaagcgccgctccggttga
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