Alnus glutinosa (common alder): 133879752
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Entry
133879752 CDS
T10577
Name
(RefSeq) uncharacterized protein LOC133879752 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
aglu Alnus glutinosa (common alder)
Pathway
aglu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133879752
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aglu03019
]
133879752
Messenger RNA biogenesis [BR:
aglu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133879752
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
133879752
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
133879752
NCBI-ProteinID:
XP_062174499
LinkDB
All DBs
Position
10:complement(18705104..18748564)
Genome browser
AA seq
2402 aa
AA seq
DB search
MLKFSSTASNQIRYLLQILDESNADSVLCELREFVEYGVEGSIMLLQTCMDQLNFFGTDS
KNMQLESVVASIFRYLLDKPNFSTVFFESLRNTEINEGTLGNFSDALHLSVSEKIAIGLA
LSDSENLEARMSGKSFCMAQIEELCANPVLLNSSERIQNIVMFLQRSEALSKHVDSFMQM
LSFVQSNDVAPFVLTPFLSDELREANFLRNMDLFHDCAEDDFDSILAEMEKEMSMGDIMK
ELGYGCTVNASQCKEILSLFLPLTEITLSKILGTIARTQAGLEDNQNMLSTFNLALGCST
LSDLQSLNSWNIDVLIDAIKQLAPDTNWIRVIENMDHEGFCFPNQEAFSFFMTVYKRACQ
EPFPLHAICGSVWKNTEGQLSFLKYAVSAPPEVFTFAHSARQLADIDAVHGHKLQLGHAN
HAWLCLDLLDVLCQLAERGHATSVRLIIEYPIKHCPEVLLLGMAHVNTAYNLLQFEVSLN
VFPVIVKNAMNSGMILHLWHVNPNLVLRGFIDSINFDPDCMTRILEICQELKIVSAVLDM
VPSSYGIRLAALASRKELVDLEKWLSYNLNTYKDIFFEECLSFLKDIQFGGSQDFSTKTF
HHSGAVLNLYVETSSTFLKVLKVHTGLISSSQLAEEVEKLHATTMDSNPRLQNGGATDSS
TSDGYAEDIEAEANSYFQQMFSGQLTIEAMVQMLARFKESSVRREQLIFECMIANLFEEY
RFFPKYPERQLKIAAVLFGSVIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTLALE
QFVDRLIEWPQYCNHILQISHLRGTHSDIVAFIEQALARISSGHSDTDGGSHASVVNHHG
SAQATSGNLELNSSSIIQPGQQLSSPLQLQPRSESLEDRHKAAVASSNDGKPLLSSVGQS
SAVHLGDASSIQKLQNAVSAPPMLSSSSGFVRPPRAVTSTRFGSALNIETLVAAAEKRET
PIEAPASEIQDKVSFIINNISVANIEAKGKEFTEIFKELYYPWFAQYMVMKRASIEPNFH
DLYLKFLDKVNSKALNKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGR
NQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKVLEPCQNSLAYQPPNPWTMGILGLLAE
IYSMPNLKMNLKFDIEVLFKNLGVDMKDVTPTSLLKDRKREVEGNPDFSNKDVGASQPQL
VAEIKSGMVPPVNQVELPLEVASTPNSGGHTHLLSQYAASLHLPSGTLMEDEKLSALGLA
DQLPSAQGLLQATPSQSPFSLTQLPAPIPNIGTHVIINQKLGALGLHLHFQRVVPIAMDR
AIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIFNAAHLMVASLAGSLAHVTCKE
PLRGSISSQLRNSLQGLSIASELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIA
QQLALRRKHREGVGPTFFDGNMYAQGSMGVVPEALRPKPGHLSLSQQRVYEDFVRLPWQN
QSSQSSHAMPSGPASSGGTGLTGAYGSASGQLNPGYSSSAGTTGFEAVSRAQDELMESNS
AMHLSASSIHIGVADGVAQLSSENDSATGSFPPTSSASELHSLDSSDVAKESGASSQLLP
SPVATERLGSSISEPSLTTRDALDKYQIVAQKLEALLNNDGKEADIQGVIAEVPEIILRC
ISRDEAALAVAQKVFKGLYENWSNVIHVGAHLAILTAIRDVCKLVVKELTSWVIYSDEDR
KFNKDITVGLIRSELLNLAEYNVHMAKLIDGGRNKAATDFAISLLQTLVVEEYTVISELH
NLVDALAKVAAKPGSPESLQQLVEVMKNPAASVATLSGINVGKEDKAKQLKDKKATGQST
ATREDYNNAESVGPDPAGFGEQVSRLFAEWYRICELPGANDAACTHYILQLHQNGLLKGD
DMTDRFFRHLTELSVAHCLSSEVQSPQQVQNMSFLAVDIYGKLVFSILKGSSKLFLLSKI
LAVTVRFIQKDAEEKKTSFNARPYFRLFINWLLDLSSLDPVIDGANVQILAAFANAFHAL
QPLKVPTFSFAWLELVSHRSFMPKMLTVNGQKGWPYVQRLLVDLFQFMEPFLRNAELGVP
VHFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPST
PNLKIDLLVEIRQSPRILSEVDAALKAKQIKADVDEYLKTRQPASFVTELKQKLLLSPSD
AASAGTRYNVPLINSLVLYVGMQQLQSKTPHAQSPTNTVPLAMFFVGAALDIFQALIADL
DTEGRYLFLNAVANQLRYPNTHTHYFSFILLYLFAESNQEIVQEQITRVLLERLIVNRPH
PWGLLITFIELIKNPRYNFWNQTFIRCAPEIEKLFESVSRSCGGPKSVDESMVSGWVSDN
TH
NT seq
7209 nt
NT seq
+upstream
nt +downstream
nt
atgttgaagttttcgtcaacggcgtcgaatcagattcggtacctgctccagatcctcgac
gaatccaacgctgactctgttctttgcgagctccgtgagtttgttgaatatggagttgag
ggaagcattatgctgctccaaacatgcatggatcaactgaacttttttggcacagactca
aagaacatgcagctggaatcagttgttgcatcaatttttagatacctgttggacaaacca
aatttcagcacagtgttttttgagtcactaaggaacacagagatcaatgaaggaactcta
gggaatttctctgatgcactgcacctgtctgtgtctgaaaaaattgccattggtcttgct
ctatcagattctgaaaaccttgaagccagaatgagtggcaaaagtttttgtatggctcag
attgaggaattgtgtgccaatcctgttttactgaactcttctgagcgaattcagaacatt
gttatgttcctccagcggtctgaggccctttccaagcatgtagattcctttatgcagatg
ttatcttttgtgcagtcgaatgatgttgccccatttgttttaactccatttctttcagat
gaattgcgtgaggccaattttctaaggaatatggatttgttccatgactgtgcagaagat
gattttgattctattttagcagaaatggagaaggaaatgagcatgggggatattatgaag
gaactaggttatgggtgcacagttaatgcatcacagtgcaaagagattttatctctgttc
ttgccactgaccgagattactctgtctaaaatacttggcacaattgcccgcactcaagct
ggtcttgaggacaatcagaacatgctttcaacgtttaacttggctcttggttgcagcact
ttgtctgatctgcaatccttgaactcctggaatattgatgttctcatagatgcaatcaag
caacttgctcctgataccaattggatacgagttattgaaaatatggaccatgaggggttc
tgctttcctaatcaggaggcattctcgttttttatgactgtatataagcgcgcgtgccag
gagccattccctcttcatgccatttgtggctctgtttggaagaataccgagggtcagcta
tcttttcttaaatatgctgtttcagcaccaccagaagtatttacatttgcccattctgca
aggcagctggccgatattgatgcagtgcatggccataagctgcaacttggacatgctaat
catgcgtggttgtgtcttgaccttttggatgtgctatgtcaactggctgagaggggtcat
gccacttctgttcggttgatcattgaatatcctattaaacactgtcctgaagtcttactt
cttgggatggcacacgttaatactgcttataacctcctccagtttgaagtgtccttaaat
gttttccccgttatagtaaaaaatgccatgaatagtggaatgattcttcacctctggcat
gttaatcccaatttggtgttgcggggatttatagattctatcaactttgatccagactgc
atgactagaatattggagatctgccaagagctaaagattgtatcagcagtgttagatatg
gttccttcttcttatggcatcagattggcagctcttgcgtcaagaaaagaacttgtagac
cttgagaagtggctcagttataatttaaatacatataaagatattttctttgaggagtgc
ctcagcttcttgaaggatattcaatttggtggatcacaggatttttccaccaaaacattc
catcattctggtgccgtcttgaatctctatgtagagactagttctaccttcttgaaggtc
cttaaagttcatacaggcttgattagctctagtcagcttgctgaggaggtggaaaagctg
catgcaacaactatggattctaatccaaggttgcagaatggtggggctacagattcttca
acgtctgatggatatgcagaagatattgaggctgaagcaaactcttacttccaacagatg
ttttctggtcagttgaccattgaagcaatggttcaaatgcttgctcgattcaaggaatcc
tctgtgagaagggaacaattaatttttgagtgcatgattgcaaatctgttcgaggagtac
agattcttccccaagtatcccgagaggcagctcaaaattgctgcagttctgtttggctct
gttatcaagcaccagcttgtaactcatctcacacttgggattgctctgcgtggtgtttta
gatgcattacgcaaacctgcagattcaaaaatgtttgtgtttgggactctggctttggag
cagtttgtagatcgtctgattgagtggccacaatattgcaatcatatcttacagatatcc
catctacgtggaactcattcagatattgttgctttcatcgaacaggctcttgcgaggatt
tcatcaggccattcagacacggatggaggcagccatgcttctgttgttaatcaccatggc
tccgctcaggctacctcaggaaatctggagttaaatagctctagcatcatacaacctggg
cagcaactttcgtccccactgcagcttcaaccgagaagtgaaagtcttgaggaccgtcat
aaagcagctgtagcatcatctaatgacgggaaaccactcttatcttctgtagggcaatct
tcagctgttcatttaggtgatgcttctagtattcagaagttacagaatgctgtaagtgct
ccgccaatgctttcttcttcatctggttttgttcgtcctcctcgagcagttacttctacc
agatttggctctgctctaaacattgaaacacttgttgctgcggccgagaaaagagaaact
cccatagaggctccagcatcagagattcaagacaaagtatcttttattataaataatatc
tcagttgcaaatattgaagccaagggaaaagaattcactgaaatttttaaggaactgtac
tatccttggtttgcacaatatatggttatgaaaagagcaagcattgagccgaattttcat
gacttgtatttgaagttcctggacaaggtcaattcaaaggctttgaataaagagattgtt
caagccacatatgagaactgcaaggttctcttaggatcagagcttataaagtcaagttcc
gaagagcgatcattgctaaaaaacttaggtagttggcttgggaagttaacaattgggagg
aatcaggtcttacgggctcgtgagattgatcctaaatctttgattattgaggcatatgag
aagggattgatgattgcagtaataccatttacttctaaggttttggaaccatgccaaaac
agtcttgcatatcaacctcccaatccttggaccatgggcattcttgggttacttgccgag
atatattcaatgccaaacttgaaaatgaatctcaagtttgatattgaggtcctattcaag
aacctgggtgttgatatgaaggatgttacaccgacttctcttctcaaggatcgcaaaagg
gaagttgaagggaatcctgatttttctaacaaagatgttggagcatcccaaccacagtta
gttgctgaaattaaatcaggaatggtacctccagtgaaccaagttgagctaccgcttgag
gttgctagtacacctaattctggtggccacacacatttattatctcagtatgctgcttct
cttcatctcccttctggtacattgatggaggatgaaaaactatcagctttaggattagct
gatcagctcccttctgcgcaaggactcttgcaagccactccatcacagtcaccgttttct
cttactcagcttcctgcaccaatacctaacattggaactcatgttattatcaaccagaag
ctcggtgctttgggcttacacctgcattttcagagagtggttccaattgcgatggacaga
gctattaaagagatagtatctggtattgttcagcgcagtgtatctatagcaactcaaaca
acaaaggagcttgttttaaaggactatgccatggaatcggatgagacgcgcatatttaat
gcagcacacttgatggtagcgagtctggcgggaagtcttgctcatgtaacatgcaaagaa
cccttacgagggtcaatatcaagtcagctaaggaattcacttcagggtctgagtattgcg
agtgaacttctagaacaagctgtacaacttgttaccaatgacaaccttgatctcggttgt
gcagtcattgaacaggctgccacggataaggcaatacaaaccattgatggggaaatagct
caacaacttgctttgaggaggaagcatagagagggtgttggccccacattttttgatgga
aacatgtatgcacaaggttctatgggtgttgtaccagaggccctccgccctaaacctggt
cacttgtccctttctcaacagcgagtttatgaggactttgttcggcttccctggcaaaat
caatctagccaaagttcacatgctatgccttctggtcctgcttcatctggcggcacgggt
ctgactggtgcatatggctcagcatctggacaattaaatcctggctactcatctagcgca
ggaaccaccggattcgaagcagtctctcgggcacaagatgagttgatggaatctaattca
gctatgcatcttagtgcttcctcaattcacattggagtggctgatggtgttgcccagctt
agttctgaaaatgattctgccactggttcatttcctccaacttcttcagcctctgagttg
cattccttggattcctctgacgttgcaaaggaatctggagcttcttcacagttgttacct
tcaccagttgccaccgagcgccttggaagtagcatatccgagccttcgctcaccactagg
gatgcattggataaataccagattgtcgcacagaagttggaagctttgctaaataatgat
ggtaaagaagcggacatccagggtgtcattgctgaagttcctgaaatcatactcagatgc
attagtcgagatgaagctgccttggctgttgcacaaaaggttttcaaaggtttatatgag
aattggtcaaacgttattcatgttggtgctcatcttgcaattctgactgctattcgtgat
gtttgcaagcttgttgttaaggagctcactagctgggttatttactcagatgaggaccgg
aagttcaacaaagatataactgttggccttattcgcagtgaattgctaaaccttgcagag
tacaatgttcacatggcaaaacttattgatggaggcaggaataaggctgcaactgatttt
gcaatttcccttctgcaaactttggtcgttgaagaatatacagttatatctgagcttcac
aatcttgttgatgctttggcaaaggttgctgcaaagcctggatctcctgagtcattacaa
cagctggttgaggttatgaagaatcctgctgctagtgttgctactctgtctggtattaat
gttggaaaggaggataaagccaaacaattgaaagacaaaaaggctactgggcaatctaca
gcaaccagggaagactataacaatgcggagtctgtaggaccagatcctgctggttttggg
gagcaggtttctaggctgtttgcggaatggtaccggatatgtgaactgcctggtgcaaat
gatgcagcctgtacacattacatcttacagttgcatcagaatggactgctgaagggggat
gatatgacagatcgctttttccgccacctgactgagctttctgttgcacattgtctatct
tcggaggtgcaatcacctcaacaagtgcagaatatgtccttccttgcagttgatatctat
ggaaaactggtcttttcgatcctgaagggatcaagtaaactctttcttttgtctaagatt
ctggccgtgactgtgagatttatccagaaggatgcagaggagaagaaaacatcttttaat
gcgagaccatattttagattgttcattaactggctgctggacctgagttccctggatcct
gttattgatggtgcaaacgttcagattttggcagcatttgcaaatgcatttcatgctttg
cagccccttaaagttcctacattcagctttgcatggctggagttggtgagtcacaggagt
ttcatgccaaaaatgctcactgtaaatggtcagaaggggtggccctatgtccagcgcttg
ctggtagacttgttccaattcatggagccgtttttgaggaatgctgagcttggagtgccg
gtacattttctgtacaaagggacgcttagggtgctgttagtgctgcttcatgatttcccc
gagttcctgtgtgattaccattttaccttctgtgatgtgattcctccaagctgcatacaa
atgcgaaacattatccttagtgcatttccccgtaatatgaggctgccagatccatctacg
cccaatttaaagattgatttacttgtagaaatcaggcaatccccacgcattctctccgag
gttgatgcagctcttaaagcaaagcagattaaggctgacgtcgatgagtatctcaagact
aggcagcccgcgtcttttgtgactgaactgaagcagaaacttctactttcaccaagtgat
gctgcctctgctggcacccgttacaatgtacccttgatcaactcccttgtgctttatgtt
ggaatgcagcagctgcagtcgaaaactcctcatgcacagtcccctaccaacactgtccca
ttggctatgttctttgttggtgccgccttggacatcttccaggcactaatagcggatcta
gacactgaagggcgctacctctttcttaatgcggttgctaaccaattgcgctatccaaac
acccatacgcattacttctccttcatccttctttacttgttcgccgaatcaaatcaggaa
atagtccaggagcaaattaccagagtgctgttagaacgcctgattgttaatcgacctcat
ccatggggccttctgattactttcatcgagttaattaagaatcctagatacaatttttgg
aaccaaaccttcataaggtgtgcccccgagattgaaaaactgtttgaatcggtctcaaga
tcctgtggggggccaaaatctgttgatgagagtatggtttctggttgggtatctgacaac
acccactga
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integrated database retrieval system
