Alnus glutinosa (common alder): 133879836
Help
Entry
133879836 CDS
T10577
Name
(RefSeq) phytochrome B
KO
K12121
phytochrome B
Organism
aglu Alnus glutinosa (common alder)
Pathway
aglu04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
133879836
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHY
PAS
PAS_2
GAF
HisKA
HATPase_c
PAS_9
PAS_4
PAS_8
Motif
Other DBs
NCBI-GeneID:
133879836
NCBI-ProteinID:
XP_062174592
LinkDB
All DBs
Position
1:complement(36946862..36958890)
Genome browser
AA seq
1132 aa
AA seq
DB search
MASGSRANNNSNQLAQSSNTTSNMKLHHAESSIPRAIEQYTVDARLHAVFEQSGESGKSF
DYSQSVRTGTQSVPEQQITAYLSRIQRGGHIQPFGCMIAVEEGTCRVIAYSENAREMLGL
LPQSVPSLERPEILTIGIDVRTLFTPSSSVLLEKAFGAREITLLNPVWIHSKNSGNPFYA
ILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVVES
VRELTGYDRVMVYKFHEDEHGEVVAESKRPDLEPYIGLHYPATDIPQASRFLFKQNRVRM
IVDCHATSVRVIQDERLMQPLCLVGSTLRAPHGCHAQYMANMGSNASLAMAVVINGNDEE
AVGGRNVMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLLEKHVLR
TQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGKYYPMGVTPTEAQIKDIVEWL
LAFHGDSTGLSTDSLADAGYPGAASLGDAVCGLAVAYITKRDFLFWFRSHTGKEIKWGGA
KHHPQDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDAEASNS
KAVIHAELGGLELQGMDELGAVAREMVRLIETATAPIFAVDVDGCINGWNAKVAELTGLS
VDEAMGKSLVHDLVYKESEETVDKLLYHALGGEEEKNVEIKLKTFGPENPKNAIYVVVNA
CSSKDYMNNIVGVCFVGQDVTGQKVVMDKFIHIQGDYKAIVHSPNPLIPPIFASDENTCC
SEWNTAMEKLTGWTRGDIMGKMLVGEVFGSCCRLKGPDALTKFMIVLHNAIGGQDTDKFP
FSFFDRNGKYVQALLTANKRVNMDGQIIGAFCFLHIASPELQQALKVQRQQEKKCFSRMK
ELAYICQEIKNPLSGIRFTNSLLEATELTEDQKQFLETSAACEKQMLKIIKDIDLESFED
GIGSLELENVEFLLGSVINAVVSQVMILLRERNLQLIRDIPEEIKSLAICGDQVRIQQVL
ADFLLNMVRYAPSPEGWVEIHVRPSLKQISDGITLLHTEFRMVCPGEGLPPELIQDMFHS
SRWVTQEGLGLSMCRKILKCMNGEVQYIRESERCYFLVILELPVPQTDSKSV
NT seq
3399 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaggtagcagagccaacaacaacagcaaccaattagctcagtcctcgaacaca
acgagcaacatgaagctccaccacgccgagtcgtccatacccagagccattgagcagtac
accgtggacgctcgcctccacgccgtgttcgaacagtccggcgagtccggtaagtccttc
gactactctcagtccgttagaaccggcacacagtcggtccccgagcaacaaatcacagcc
tacttgtccagaatccaaaggggtggccatatccaaccctttggttgcatgattgccgtg
gaggaaggcacctgccgcgtcatcgcgtacagcgaaaacgcacgcgagatgctcggtctc
ttgcctcagtcagtcccgagtctcgagaggcccgagattttgacaattgggattgatgtg
aggacgctatttacgccttcgagctcggttctgctcgagaaggcttttggagctagggaa
atcacgttgttgaacccggtttggattcattccaagaattctgggaatcccttttacgcg
attttgcacaggatagatgtggggattgtgattgatttggagcctgcgaggacagaggac
cctgctctgtctattgccggggcggtgcagtctcagaagttggctgtgcgggctatttcg
cagctgcagtcgcttcccggtggggatatcaagctcttgtgtgatactgtagtcgagagt
gtgagagagcttactgggtatgatagggttatggtgtataagtttcatgaggatgagcat
ggtgaggttgtggccgagagcaagaggccagatttggagccgtatattgggttgcattat
ccggccacggatattcctcaggcttcgaggtttttgtttaagcagaacagggttaggatg
attgtggattgccatgccacgtcggttcgggtgattcaggatgagcggcttatgcagcct
ttgtgcttggttggttccacacttcgtgctcctcatggttgtcatgctcagtatatggcc
aatatgggctcaaatgcctcattagcaatggcagttgttatcaatgggaatgacgaggaa
gctgttggtgggcggaatgtaatgaggttgtggggcttggttgtttgccaccacacttct
gctcgatgcattccattccctctccgctatgcttgtgagttcttgatgcaggcgtttgga
ctccaattgaatatggagttgcaattggcatcgcaattgttggagaaacatgttttaagg
acgcagactctcttgtgcgatatgcttcttcgtgactcacctactggaattgttactcaa
agtcctagcattatggacctcgtgaagtgtgatggggcagccctctactatcaggggaag
tactacccaatgggtgtgacccctacagaggcgcagataaaggacatagtggagtggttg
ttggctttccatggagactccacaggtttaagcacagacagtttggctgatgctgggtac
cctggagcagcctcgcttggagatgctgtttgtggtttggccgttgcttatatcactaaa
agggattttctattctggttccgatcccacactggaaaagagatcaaatggggtggtgcc
aagcatcatccgcaggacaaggatgatgggcagaggatgcatccacgttcttcgttcaag
gcatttttggaagtggtaaaaagccgcagcttgccatgggagaatgcagaaatggatgct
atccactctttgcagcttattctgcgagactcgtttagagatgctgaggcaagcaattct
aaggctgttatacatgccgagcttgggggcctggagctgcaagggatggatgagctcggt
gccgttgcgagagaaatggtcaggttgatagagactgcaactgcacctatatttgctgta
gacgttgatggctgtataaatgggtggaatgcgaaggttgcagagttgactgggctctca
gtagatgaagctatggggaagtccttggttcacgatcttgtttataaagaatctgaagaa
acagtagacaagcttctttatcacgctttgggaggtgaagaagaaaagaatgtagagata
aaactgaagacctttggccctgagaatcctaagaacgctatatatgtggtggtcaatgct
tgctccagcaaggattacatgaataatatcgttggagtttgttttgttggtcaggatgtt
accggtcagaaagtggtgatggacaagttcatccacatacaaggtgattacaaggctatt
gttcacagtcccaatcctttgatccctcccatatttgcttcagatgagaatacgtgttgc
tcagagtggaacactgccatggaaaagctcactgggtggacccgaggggacatcatggga
aaaatgttggttggagaggtttttggcagttgctgtcgactcaagggtccagatgctttg
acaaaattcatgattgtcttgcacaatgcaattggagggcaggacacagataagttccca
ttttccttctttgatcggaatgggaaatatgtacaagctctcttgacagcaaacaagagg
gtaaatatggatggccagattattggagccttctgcttcttgcacattgctagtcctgag
ctgcagcaagctctgaaagttcagcggcaacaagagaagaaatgcttttcaaggatgaaa
gagttggcttacatttgccaggaaataaagaaccctttgagtggtattcgttttactaac
tcacttttggaggctacagaattgaccgaagatcaaaagcagttccttgagactagtgct
gcttgtgagaagcagatgttgaagattataaaggatattgatcttgagagctttgaagat
ggaatcggttcattggagcttgagaatgtagaattcttacttgggagtgtcataaatgct
gttgttagccaagtaatgatattgctgagggaaagaaatttacaattgattcgggatatt
ccagaagaaatcaaatcattggccatttgtggtgatcaagtaagaattcaacaggtgctt
gccgatttcttgttaaatatggtgcgttatgcaccatctccagaaggttgggtagagatt
catgttcgtccaagcttgaagcaaatttctgatggaatcacacttttgcacacagaattc
aggatggtatgccctggtgaaggtctccctcctgaattgattcaggacatgttccacagc
agtcgatgggtgactcaggaaggcctagggctgagcatgtgcagaaaaattttaaagtgc
atgaacggtgaagtccaatatatcagagagtcagaaagatgttatttcttagttattctt
gaactacccgtgcctcagacagactcaaagagtgtttga
DBGET
integrated database retrieval system
